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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04282 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 1011aa MW: 110640 Da PI: 6.3535 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 3e-23 | 250 | 350 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++ EMT04282 250 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNDNNQLLLG 347 99******************************9999996.9************************************************..6767777888 PP EE- CS B3 96 vfr 98 ++ EMT04282 348 IRH 350 875 PP | |||||||
2 | Auxin_resp | 117 | 1.6e-38 | 376 | 459 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k EMT04282 376 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 459 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-47 | 237 | 379 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 241 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.67E-22 | 249 | 342 | No hit | No description |
Pfam | PF02362 | 2.4E-21 | 250 | 350 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-23 | 250 | 352 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.111 | 250 | 352 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-33 | 376 | 459 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.0E-8 | 873 | 962 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.34E-6 | 875 | 952 | No hit | No description |
PROSITE profile | PS51745 | 24.11 | 876 | 960 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1011 aa Download sequence Send to blast |
MAIRGGEWSR FSGPLQAEAA AASWRRGNSR LDEAAAEDGG AVLGAEGEVG RCCREPGVAL 60 SSQLLRVPAA SRRSSVFSAS VASLDGEKAL HVRDAAVPPG KRWYISSHGP LINSAVQFST 120 CTSVCISSGL RIVECADWEQ RCLNSELWHA CAGPLVSLPA VGSRVIYFPQ GHSEQVAAST 180 NKEVDSQIPN YPNLPPQLIC QLHNVTMHAD AETDEVYAQM TLQPLSPEEQ KEPFLPIELG 240 AASKQPTNYF CKTLTASDTS THGGFSVPRR SAEKVFPPLD FSLQPPCQEL IAKDLHDNEW 300 KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVIFIWND NNQLLLGIRH ANRPQTIMPS 360 SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFI IPLAKYVKSV YHTRVSVGMR 420 FRMLFETEES SVRRYMGTIT TISDLDSVRW PNSHWRSVKV GWDESTAGEK QPRVSLWEIE 480 PLTTFPMYPT AFPLRLKRPW ASGLPSMHDM FNGVKNDDFS RYSSLMWLGD GDRGAQSLNF 540 QGVGASPWLQ PKMDSPLLGL KPDTYQQMAA AALEEIRTGD PSKQSSALLQ FQQTQNPNGG 600 LNSVYANHVL QQMQYQAQQS SLQTVQHGHS QYSGNPGFLQ SQFQQLHLHN PPAPSQQGHQ 660 VIQQSHQEMQ QQLSSGCHRI SDVDSSMPGS ESASQSQSSF YQQNLLEGNN DPSLHLHNGF 720 RNFSSQDSSN LVSLPRTDQL MAPEGWPSKR LAVEPLGHIE SRSVQPKHEN VNHQSNMSHF 780 AGTLAPQSAR DSSSVQAYGA NVDNQFLSSS FAFQDGMAGA RGGSSSGTVS MAIPLLRYSG 840 EDLPPADTLA TSSCIGESGT FNSLDNMCGV NPSQDGTFVK VYKSGSPGRS LDITKFSSYY 900 ELRGELEHLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFVNSV GCIKILSQQE 960 VQQMVRGGGE GLLSSAPGAR MAQGNVCDGY SGGHDLQNLT GNMASVPPLD Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-158 | 143 | 480 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368822 | 0.0 | AK368822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2080I14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168308.1 | 0.0 | auxin response factor 25-like isoform X2 | ||||
Swissprot | Q2QM84 | 0.0 | ARFY_ORYSJ; Auxin response factor 25 | ||||
TrEMBL | M8BMR2 | 0.0 | M8BMR2_AEGTA; Auxin response factor | ||||
STRING | EMT04282 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12712 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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