PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 898223 | ||||||||
Common Name | ARALYDRAFT_898223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 423aa MW: 48588.5 Da PI: 7.7683 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.9 | 6e-41 | 138 | 301 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceaesssssasns 85 g++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i+++++t s +++s+ 898223 138 GRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTlsyqcsfssgdeshtrpelrSMDTSSD------------- 227 799************************************************************988887766666555555552222222............. PP TCP 86 ssg..........................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 + ++ k+k+++ ++ +l+k++rakar+ra++rt ekm++k k 898223 228 --LcelpsmwtvddrgsntnttetrgnkvDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMEKMMMKMK 301 ..0222233333333333444566677776666666788888888888*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-41 | 139 | 299 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.724 | 139 | 197 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.574 | 278 | 295 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MNNNTFSTLT TINDDYMLFP YNDHNSSQPL LPFSPSSSIN DILIHSTSNN HHHQFLQPSP 60 FSQFEFVPDC ALLTTFHPQN NGHDDNQTIP NDNHHPSLHF PLNNTIGDQP AEPSETITHI 120 EDSQRISDPK MKKVKKLGRT DRHSKIKTAK GTRDRRMRLS LDVAKELFGL QDMLGFDKAS 180 KTVEWLLTQA KPEIIKIAKT LSYQCSFSSG DESHTRPELR SMDTSSDLCE LPSMWTVDDR 240 GSNTNTTETR GNKVDGRSMR GKRKRPEPRT PILKKLSKDE RAKARERAKD RTMEKMMMKM 300 KGRSQLVKVV EEEAHHHGEI MKNTISEVNR NSFEMSHCED EIEKLCKNDR FAVCNEFVMN 360 KKDHISNESY DIVNYKLNSS FPVINHHRSQ GAANSIEQHQ FTDLHNSLVA KPDLMYNYQN 420 MY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 898223 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF062581 | 0.0 | EF062581.1 Arabidopsis thaliana teosinte branched 1-like 1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002883139.1 | 0.0 | transcription factor TCP18 isoform X1 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | D7L8J4 | 0.0 | D7L8J4_ARALL; Uncharacterized protein | ||||
STRING | scaffold_302193.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 0.0 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | 898223 |
Entrez Gene | 9321329 |