PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 894620
Common NameARALYDRAFT_894620
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 413aa    MW: 46991.6 Da    PI: 5.4045
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
894620genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.5e-081457340
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
              +r C+ + + +++++C  ++ +lC+ C  + H+       H++v
    894620 14 ARACDSCVKRRARWYCAADDAFLCHACDGSVHSAnplarrHERV 57
              578*****************************657888888876 PP
2CCT68.41.9e-23363406144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  894620 363 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 406
             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6941259IPR000315B-box-type zinc finger
SMARTSM003365.0E-101259IPR000315B-box-type zinc finger
PfamPF006432.1E-61457IPR000315B-box-type zinc finger
CDDcd000214.52E-91559No hitNo description
PROSITE profilePS5101716.083363405IPR010402CCT domain
PfamPF062035.4E-18363405IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK  60
SASSGKHRHA SSSSPSHQST WHQGFTRKAR TPRGGKKSHT MVFHDLVPEM STENQAESYE  120
VEVEEQLIFE VPVMNPMVKE QCFHQSVETK VEFPMMPLSF KCSDEEDEDN AESCLNGLFP  180
TDMELAQFTA DVETLLGGGM EREFHSIEEL GLGEVLKIEK EEVEEEEGVV TREVYDLDEA  240
EETSPFEISF DYEYAHKTTY EEEEEDEKED VMKNRMDVGV NEMSGRIKEE NKEKALMLRL  300
DYESVISTWN GQGIPWTDRE PSEIDLDMVC CPTHSLGESG EAHHHNHFRG LGLHMGEAGD  360
GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRSSIGV AL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373389RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap894620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0546250.0AY054625.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520; T26J14.9) mRNA, complete cds.
GenBankAY0815410.0AY081541.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888669.10.0zinc finger protein CONSTANS-LIKE 6
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLD7KWD20.0D7KWD2_ARALL; Zinc finger (B-box type) family protein
STRINGscaffold_201694.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]