PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

491122

Common Name

ARALYDRAFT_491122

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 976aa MW: 108410 Da PI: 6.3726

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
491122	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.6	8.9e-27	658	708	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++g c+T+LKriCRq+GI RWP+Rkik++ 491122 658 EKTIGLEVLRQYFAGSLKDAAKSIGGCPTTLKRICRQHGITRWPSRKIKKV 708 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.37	647	728	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-23	661	708	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.33E-24	864	960	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.4E-25	872	956	No hit	No description
PROSITE profile	PS51745	29.794	874	957	IPR000270	PB1 domain
SMART	SM00666	1.8E-28	874	957	IPR000270	PB1 domain
CDD	cd06407	9.10E-42	876	956	No hit	No description
Pfam	PF00564	3.3E-18	876	956	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MEGGRGGGDG NFLPNSNFGA FSESAMDMDF MDELFFDGCW LETTDGKSFK QTMGQPVSDS 60 TIMNDNNNNS YLYGYQYTEN LSQDHISNEE TGRKFPPITP SFLKIEDLSN QLPFDEAAVM 120 SSAQAEKLLL EESEGGRRYW IAPRTSQGPS SSVKDRLVQA IKGLNEAVQD KDFLIQIWVP 180 IQQEGKNFLT TLEQPHFFNP KYSSLKRYRD VSVAYNFLAD EDSKESVGLP GRVFLGKLPE 240 WTPDVRFFRS EEYPRIKEAE KCDVRGSLAL PVFERGSGIC LGVVEIVTTT QKMNYRPELD 300 NICKALESVN LRSSRSLNPP SREVCQNGLI NQTLTSSIHR NNDIVFLNVI IPFCFSFCRL 360 YDLPLALTWA PCARQGKVGS RHSDENFSEC VSTVDDACIV PDHQSRHFLE ACSEHHLLQG 420 EGIVGKAFKA TKLFFVPEVT TFSKTNYPLA HHAKISGLHA ALAVPLKNKF NSSVEFVLEF 480 FFPKACLDTE AQQEMLKSLS ATLQQDFRSL NLFIDKELEL EVVFPVREEV VFAENPLLNA 540 GTGENMKPLP LEDMSQEDSS WISHMIKANE KGKGVSLSWE YQKEEPKEEF MLTSGWDNNQ 600 IGSGHNNFLS EAEQFQKVSN SGLRIDMDPS FESASFGVVG QTLLGSRRPG EKRRTKTEKT 660 IGLEVLRQYF AGSLKDAAKS IGGCPTTLKR ICRQHGITRW PSRKIKKVGH SLKKLQLVID 720 SVQGVQGSIQ LDSFYTSFPE LSSPHMSGTG TSFKNLNAQT ENGGSAQGTA AAPKSPPSSS 780 CSHSSGSSTC CSTGANQSTN TGNTSNTVTT LMAENASAIL KRARSEVRLH TMNQDETKSL 840 SRTLSHKTFS EHPLFENPPR LPENSSRKLK AGGASKVKAT FGEAKVRFTL LPTWGFRELQ 900 HEIARRFNID NIAPFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEASQV 960 KLGGSFGSIG LGPSL*

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MEGGRGGGDG NFLPNSNFGA FSESAMDMDF MDELFFDGCW LETTDGKSFK QTMGQPVSDS  60
TIMNDNNNNS YLYGYQYTEN LSQDHISNEE TGRKFPPITP SFLKIEDLSN QLPFDEAAVM  120
SSAQAEKLLL EESEGGRRYW IAPRTSQGPS SSVKDRLVQA IKGLNEAVQD KDFLIQIWVP  180
IQQEGKNFLT TLEQPHFFNP KYSSLKRYRD VSVAYNFLAD EDSKESVGLP GRVFLGKLPE  240
WTPDVRFFRS EEYPRIKEAE KCDVRGSLAL PVFERGSGIC LGVVEIVTTT QKMNYRPELD  300
NICKALESVN LRSSRSLNPP SREVCQNGLI NQTLTSSIHR NNDIVFLNVI IPFCFSFCRL  360
YDLPLALTWA PCARQGKVGS RHSDENFSEC VSTVDDACIV PDHQSRHFLE ACSEHHLLQG  420
EGIVGKAFKA TKLFFVPEVT TFSKTNYPLA HHAKISGLHA ALAVPLKNKF NSSVEFVLEF  480
FFPKACLDTE AQQEMLKSLS ATLQQDFRSL NLFIDKELEL EVVFPVREEV VFAENPLLNA  540
GTGENMKPLP LEDMSQEDSS WISHMIKANE KGKGVSLSWE YQKEEPKEEF MLTSGWDNNQ  600
IGSGHNNFLS EAEQFQKVSN SGLRIDMDPS FESASFGVVG QTLLGSRRPG EKRRTKTEKT  660
IGLEVLRQYF AGSLKDAAKS IGGCPTTLKR ICRQHGITRW PSRKIKKVGH SLKKLQLVID  720
SVQGVQGSIQ LDSFYTSFPE LSSPHMSGTG TSFKNLNAQT ENGGSAQGTA AAPKSPPSSS  780
CSHSSGSSTC CSTGANQSTN TGNTSNTVTT LMAENASAIL KRARSEVRLH TMNQDETKSL  840
SRTLSHKTFS EHPLFENPPR LPENSSRKLK AGGASKVKAT FGEAKVRFTL LPTWGFRELQ  900
HEIARRFNID NIAPFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEASQV  960
KLGGSFGSIG LGPSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	491122

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ579912	0.0	AJ579912.1 Arabidopsis thaliana partial mRNA for NIN-like protein 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020874363.1	0.0	protein NLP2
Refseq	XP_020874364.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	D7MD23	0.0	D7MD23_ARALL; RWP-RK domain-containing protein
STRING	fgenesh2_kg.7__555__AT4G35270.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	491122
Entrez Gene	9303152