PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

491087

Common Name

ARALYDRAFT_491087

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 330aa MW: 38338.7 Da PI: 9.4883

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
491087	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84	1.4e-26	199	248	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +e+sledlskyF l+i +A+++L+v+lTvLK++CR++GI+RWPhRkiksl 491087 199 AELSLEDLSKYFGLTIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 248 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.769	181	268	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	201	248	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAHSLTSLAV FQSVTRKEMM RSLHVYGSVE IEREFLFKSK SCYVEKKAKP LFRSEDSRRP 60 EISEGSVFGT WRCIFVFRFT HSLPRFPTLL CLSRNPKLED IPNLANELKF ISELNTKKPS 120 KISEEEQISE DEQCSTDEYY NSDLPKPRKL VLKQDLNCLP DSETEHSESE NEKTEHSESD 180 AKSEILERKK MRTTSRHVAE LSLEDLSKYF GLTIVEASRN LNVGLTVLKK KCREFGIPRW 240 PHRKIKSLDS LIQDLQREAE KQQEKNEAAA MAVAKKQEKL ETEKRNIVMR PFMEIQTETK 300 KFRQDNFKKR HRASRAKKNQ ESLVTSSST*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	491087

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	1e-104	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	1e-104	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	1e-104	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869079.2	0.0	LOW QUALITY PROTEIN: protein RKD5
Swissprot	O81791	0.0	RKD5_ARATH; Protein RKD5
TrEMBL	D7MCF1	0.0	D7MCF1_ARALL; RWP-RK domain-containing protein
STRING	fgenesh2_kg.7__520__AT4G35590.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	0.0	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	491087
Entrez Gene	9305150

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]