PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491005
Common NameARALYDRAFT_491005
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 326aa    MW: 34515.5 Da    PI: 6.726
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491005genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.81.4e-68912502154
  DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsstklssaes 96 
             rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s     +         ++ +kr+r++  +   ++ss++l+s ++
  491005  91 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgsggggggGSSIPKRHRDT--TLPGTSSSSRLPSDSA 191
             67899*****************************************************999888778899999889999999987..888899999******* PP

  DUF702  97 kkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
               e+   s+P evss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
  491005 192 GLEMGEVSFPGEVSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 250
             *****************************8899************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-6194249IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.3E-2796138IPR006510Zinc finger, lateral root primordium type 1
Gene3DG3DSA:2.30.27.108.2E-5125184No hitNo description
TIGRFAMsTIGR016241.2E-28200248IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSGIFSLGGN NNNNNNNGDE EEENQQQQKT NWVWYRSNAN TNNINPSSSQ QVWQIPPEQM  60
LMHHHPHPQQ QSLDLYPGHQ IDVSDLATSS RSITISCRDC GNQAKKDCTH MRCRTCCKSR  120
GFDCSTHVRS TWIPVARRRE RQQQLHMSTS GGGGGSGSGG GGGGGSSIPK RHRDTTLPGT  180
SSSSRLPSDS AGLEMGEVSF PGEVSSDALF RCVKMSGVDD GGDGQYAYQT TVNIGGHLFK  240
GILYDQGPES SYMSGGSGGS DHQSSSAGGG GGGNPFNPPV VTDGSGGVSS AMFVDPNSGG  300
YYSSNMTTSV FMPPGTQFYQ NPPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155165SGSGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap491005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221410.0AL022141.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project).
GenBankAL1615890.0AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874273.10.0protein SHI RELATED SEQUENCE 2
SwissprotO655171e-178SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLD7MBN00.0D7MBN0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__438__AT4G36260.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-158Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]