PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489353
Common NameARALYDRAFT_489353
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 361aa    MW: 38841.2 Da    PI: 5.2869
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489353genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.5e-07436436
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
              + C+ +++  + l+C+ +  +lC +C ++ H  
    489353  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
              58***************************9954 PP
2zf-B_box27.46.9e-094691342
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
               ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
    489353 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
              689*****************************66899999*99986 PP
3CCT706.1e-24293336144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  489353 293 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 336
             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
PfamPF006433.2E-5443IPR000315B-box-type zinc finger
CDDcd000217.33E-9548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006433.4E-74691IPR000315B-box-type zinc finger
CDDcd000218.28E-104791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.767293335IPR010402CCT domain
PfamPF062037.0E-18293335IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS DGSVKHTAVN FLDDCYLSDI  120
DGNGSREEEE EEAASWLLPN PKTTTTATAG MVAVTAAEEV PGDSPEMNTG QQYLFSDPDP  180
YLDLDYGSVD PKVESLEQNS SGTDGVVPVE NRTVRVPTVN ENCYEMDFTG GSKGFAYGGY  240
NCISHSVSSS SMEVGVVPDG GSVADVSYPY GGPATSGADP GSQRAVPLTS AEREARVMRY  300
REKRKNRKFE KTIRYASRKA YAEMRPRIKG RFAKRTDTSE SSDVVGHGGI FSGFGLVPTF  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMap489353
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937570.0AB493757.1 Arabidopsis thaliana At5g24930 mRNA for hypothetical protein, partial cds, clone: RAAt5g24930.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878031.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T90.0COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLD7M3T20.0D7M3T2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2487__AT5G24930.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.10.0CONSTANS-like 4