PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488981
Common NameARALYDRAFT_488981
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 1169aa    MW: 129504 Da    PI: 6.7972
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488981genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.6e-23127228199
             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +  + +++l+++++
  488981 127 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR--DGKAQLLLGIR 226
             99*****************************98888885.9************************************************5..46788899999 PP

             -S CS
      B3  98 rk 99 
             r+
  488981 227 RA 228
             97 PP
2Auxin_resp111.49.1e-37253336183
  Auxin_resp   1 aahaastksvFevvYnPr.astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha +++s+F+++YnPr a+++eFvv+++k+ ka++ +vs+GmRf+m fete++  rr++Gtv+g+sdldpvrW+nS+Wr+L+
      488981 253 AAHANANNSPFTIFYNPRwAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 336
                 799**************846789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-42117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-41121242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-19126227No hitNo description
PROSITE profilePS5086312.125127229IPR003340B3 DNA binding domain
SMARTSM010199.7E-23127229IPR003340B3 DNA binding domain
PfamPF023623.1E-21127228IPR003340B3 DNA binding domain
PfamPF065078.5E-32253336IPR010525Auxin response factor
PfamPF023091.2E-910391127IPR033389AUX/IAA domain
PROSITE profilePS5174524.86510411125IPR000270PB1 domain
SuperFamilySSF542779.42E-810541120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009638Biological Processphototropism
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010311Biological Processlateral root formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1169 aa     Download sequence    Send to blast
MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK  60
QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN  120
RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR  180
HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI  240
SSDSMHIGVL AAAAHANANN SPFTIFYNPR WAAPAEFVVP LAKYTKAMYA QVSLGMRFRM  300
IFETEECGVR RYMGTVTGIS DLDPVRWKNS QWRNLQIGWD ESAAGDRPSR VSVWDIEPVL  360
TPFYICPPPF FRPRFSGQPG MLDDETDMES ALKRAMPWLD NSLEMKDPSS TIFPGLSLVQ  420
WMNMQQQNGQ LPSAATQPGF FPSMLSPTAA LHNNLGGTDD PSKLLSFQTP QGGISSSNLQ  480
FNKPNPQAPM SQLPQPPTTL SQQQQLQQLL HSSLNHQQQH QQQQQQQLQQ QQQQLQSQQH  540
SNNNQSHSQQ QQQLLQQQQQ QLLQQQNQQP LQQQTQQQQQ QQLRTQPLQS HSHHQPQPQQ  600
LQQHKLQQQL QLPQNQLYNG QQAAQQLQVQ QVSTHHLQPQ LVSGSMASSV ITPPPSSLNQ  660
SFQQQQQSKQ LPQAHHLLGA STSQSSVIET SKSSSNLMSA PPQETQFPRQ VEQQQPPGVN  720
GQNQQTLLQQ KAHHAQAQKI FQQSLLEQPH LQFQLLQRLQ QQQQQQQQFL SPQSQLPHHQ  780
LQSQQLQQLP PLSQGHQFPS SCTNNGLSTL QPPQMLVSRP QEKQNPPVGG GVKAYSGITD  840
GGDAPSSSTS PSTNNCQISS SGFLNRSQSG PAILIPDAAI DISGNLVQDL YSKSDMRLKQ  900
ELVGQQKSKA SLTDHQLEAS ASGTSYGLDG GDNNRQQNFL APTFGLDGDS RNSLLGGANV  960
DNGFVPDTLL SRGYDSQKDL QNMLSNYGGV TNDIGTEMST SAVRTQSFGV PNVPAISNDL  1020
AVNDAGVLGG GLWPAQTQRM RTYTKVQERG SVGRSIDVNR YRGYDELRHD LARMFGIEGQ  1080
LEDPQTSDWK LVYVDHETDI LLVGDDPWEE FVNFVQSLKI LSSAEVQQMS LDGNFAGVPV  1140
TNQACSGGDS GNAWRGHYDD NSATSFNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1662135751388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap488981
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0421950.0AF042195.1 Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7M0440.0D7M044_ARALL; Auxin response factor
STRINGfgenesh2_kg.6__2115__AT5G20730.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.30.0ARF family protein