PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 483462 | ||||||||
Common Name | ARALYDRAFT_483462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 919aa MW: 101580 Da PI: 5.6921 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.2 | 4.3e-25 | 559 | 622 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLg.............vclTvLKriCRqyGIkRWPhRkiksl 52 ek+++l+ l+++Fs+++kdAAk+Lg c+T+LKriCRq+GI+RWP+Rki+++ 483462 559 EKNVTLSALQQHFSGSLKDAAKSLGgetstffpgmdliFCPTTLKRICRQHGIMRWPSRKINKV 622 89***********************************99***********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.845 | 548 | 642 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.2E-26 | 561 | 622 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.92E-22 | 808 | 900 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 5.8E-23 | 816 | 897 | No hit | No description |
PROSITE profile | PS51745 | 21.727 | 818 | 900 | IPR000270 | PB1 domain |
SMART | SM00666 | 6.1E-25 | 818 | 900 | IPR000270 | PB1 domain |
CDD | cd06407 | 3.76E-38 | 819 | 899 | No hit | No description |
Pfam | PF00564 | 8.5E-18 | 821 | 899 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 919 aa Download sequence Send to blast |
MDGLSTTFGS GVRSLLSDDM LNSSSELMNF DSFAAWCNSP SATDILFAQY GLSNSQPMPF 60 GAFTSFHAAE PKATSLTRSF HDLESSYYGQ ERSSVQELSS QFHRSSDSDE LSGKRRKVVN 120 QKIGFPNVLN CTIPRSLSHS LDEKMLKALS LFMESSGSGE GILAQVWTPI RTGDQYLLST 180 CDQAYLLDPR LSQYREVSRK FTFASEANQS SFPGLPGRVF ISGVPEWTSN IMYYKTDEYL 240 RMKHAIDNEV RGSIAIPILE ASGTSCCAVM EFVTSKEKPN FDMEMDSVCR ALQAVNLRTS 300 AIPRPQYLSS SQRDALAEIQ DVLRAVCHAH KLPLALAWIP CRKDQSIRVS GPKSGENYIL 360 CIEETACYVN DMEMKGFVHA CLEHCLREKE GIVGKAFISN QPFFSSDVKS YDISEYPIVQ 420 HARKYGLNAA VAIKLRSTYT GEDDYILELF LPVSMKGSLE QQLLLDSLSG TMQRICRTLR 480 TVSEVGSTKK EVSNFPQITS LGNLGNFQTR SLDSEVNSTR SIFSGMSSDK ENSITISQGA 540 LEQDMSKART LEKKKSTTEK NVTLSALQQH FSGSLKDAAK SLGGETSTFF PGMDLIFCPT 600 TLKRICRQHG IMRWPSRKIN KVNRSLRKIQ TVLDSVQGVE GGLKFDSTTG EFIAVGPLIQ 660 EFDTQKGLSS HGNDAHARRS QEDMTDDTSF ELHEAKFVDN AIKLEEDMIM NQARTGSFME 720 INASGQPWGW MAEQSGLNGS EGIHSVCNLS SLEISDGMDP TIRCSGSIVE PNQSMSCSIS 780 DSSNGSGAVM RGSSSTSMED WNQMKTQNNN SGESRSTTLI VKATYREDTV RFKFEPSVGC 840 PQLYKEVGKR FKLQDGSFQL KYLDDEEEWV MLVTDSDLQE CLEILYGMGK HSVKFLVRDL 900 PVLIGSSAGS NGYLGTGL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 483462 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC002335 | 0.0 | AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence. | |||
GenBank | AY102562 | 0.0 | AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds. | |||
GenBank | AY102563 | 0.0 | AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds. | |||
GenBank | AY649251 | 0.0 | AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883776.1 | 0.0 | protein NLP8 isoform X2 | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | D7LK24 | 0.0 | D7LK24_ARALL; RWP-RK domain-containing protein | ||||
STRING | fgenesh2_kg.4__2522__AT2G43500.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2299 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 483462 |
Entrez Gene | 9316116 |
Publications ? help Back to Top | |||
---|---|---|---|
|