PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 480003 | ||||||||
Common Name | ARALYDRAFT_480003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 307aa MW: 34761.9 Da PI: 9.8443 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 74.6 | 1.7e-23 | 66 | 146 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+Lie ++e++ +++rg lk ++Wee++ ++ ++ g+ers++qC++k+e+++kr++ ++++++ s +p+++q+e 480003 66 WTHDETLLLIESYKEKWYAIGRGPLKSTHWEEIAVAVsSRSGVERSSTQCRHKIEKMRKRFRSERQNMGPI-----SIWPFYNQME 146 ***********************************998899****************************84.....68*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.493 | 66 | 123 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.7E-20 | 66 | 148 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MTTPSPTSSP PSDSNPNSAA TPPHHKQQPP SPPPLTNPSS PPPQITVVAL AASTSAVARK 60 TQPVLWTHDE TLLLIESYKE KWYAIGRGPL KSTHWEEIAV AVSSRSGVER SSTQCRHKIE 120 KMRKRFRSER QNMGPISIWP FYNQMEELDS NPAPISARPL TRLPPNSNNH YKDDDDEDDD 180 NYEEEEDEDE RQSKSRSINY ILRRPGTVNR FAGVGGGLLS WGQKERSSKR KRNDGDGGER 240 RRKGARAVAA EIRAFAERVM VMEKKKIEFV KETVRLRKEM EIRRINLIQS SQTQLLEFIN 300 NAFDSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 242 | KRKRNDGDGGERRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 480003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028609 | 0.0 | AB028609.2 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8. | |||
GenBank | AK118157 | 0.0 | AK118157.1 Arabidopsis thaliana At3g24860 mRNA for unknown protein, complete cds, clone: RAFL19-47-G19. | |||
GenBank | BT005491 | 0.0 | BT005491.1 Arabidopsis thaliana clone U50805 unknown protein (At3g24860) mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002883567.1 | 0.0 | trihelix transcription factor ASIL1 | ||||
TrEMBL | D7L5T7 | 0.0 | D7L5T7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__2704__AT3G24860.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10281 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 1e-146 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | 480003 |
Entrez Gene | 9319634 |