PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

476700

Common Name

ARALYDRAFT_476700

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 345aa MW: 38399.8 Da PI: 7.0372

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
476700	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227.8	2e-70	117	283	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsalsstklss 93 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s++++++kr re + + sal++t++++ 476700 117 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREAsggnndddkdhSGGAGSALANTRVVN 219 7899********************************************************999977777776666666666666657788999**** PP DUF702 94 aeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 a+s++ le+s+ lP+ev+s+avfrcv+vss++d +++e+aYqtav+igGhvfkGiLydqG+++ 476700 220 ANSNSGLEVSQqLPQEVNSPAVFRCVKVSSIEDdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 283 *9998766***************98544567*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-63	120	282	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.1E-28	122	164	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.3E-27	232	281	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDN SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE 60 HQQQQHQQRQ HASAPANFYS FGMVPSGSSS NNNNNRSRSL YFNVVSDHEP GGFTVTRQGG 120 MNCQDCGNQA KKDCPHMRCR TCCKSRGFHC QTHVKSTWVP AAKRRERLAQ LASLQHHSAS 180 SRETQNAKRL REASGGNNDD DKDHSGGAGS ALANTRVVNA NSNSGLEVSQ QLPQEVNSPA 240 VFRCVKVSSI EDDEDDQEYA YQTAVNIGGH VFKGILYDQG PDQDHNHHLN LLASTATTTN 300 VEETATKTVT GNNNNGLMLD PSSLYPAQLN SFIAGTPFFT PPRS*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDN SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE  60
HQQQQHQQRQ HASAPANFYS FGMVPSGSSS NNNNNRSRSL YFNVVSDHEP GGFTVTRQGG  120
MNCQDCGNQA KKDCPHMRCR TCCKSRGFHC QTHVKSTWVP AAKRRERLAQ LASLQHHSAS  180
SRETQNAKRL REASGGNNDD DKDHSGGAGS ALANTRVVNA NSNSGLEVSQ QLPQEVNSPA  240
VFRCVKVSSI EDDEDDQEYA YQTAVNIGGH VFKGILYDQG PDQDHNHHLN LLASTATTTN  300
VEETATKTVT GNNNNGLMLD PSSLYPAQLN SFIAGTPFFT PPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	476700

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY800620	0.0	AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBank	AY924730	0.0	AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002889030.1	0.0	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	D7KSQ4	0.0	D7KSQ4_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.2__1830__AT1G75520.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	0.0	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	476700
Entrez Gene	9325093

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]