PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476523
Common NameARALYDRAFT_476523
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 392aa    MW: 44001.3 Da    PI: 4.6717
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476523genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.13.6e-082263640
  zf-B_box  6 CpeHee.kelqlfCedCqqllCedClleeHkg......Htvv 40
              C+ + +  +++++C  ++ +lC++C +++H+       H++v
    476523 22 CDACMKrSRASWYCPADDAFLCQSCDSSIHSAnhlakrHERV 63
              *****9556********************9557666667665 PP
2CCT70.73.6e-24344387144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  476523 344 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRT 387
             9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.2E-101765IPR000315B-box-type zinc finger
PfamPF006432.1E-62263IPR000315B-box-type zinc finger
CDDcd000216.76E-92265No hitNo description
PROSITE profilePS501199.5272265IPR000315B-box-type zinc finger
PfamPF062032.3E-18344386IPR010402CCT domain
PROSITE profilePS5101716.142344386IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVVDVERRAA SVPGGKMVAR GCDACMKRSR ASWYCPADDA FLCQSCDSSI HSANHLAKRH  60
ERVRLQSSSW TETTEKTTSV WYEGFRRKAR TPRNKGLASE KLLQMEANDP LVPDLGGEEE  120
EVFFSFSSVE ENEESLNCCV PVFDPFSDMV IDDINGFCLV PDEVINNTTN GEELGELERE  180
VIDDEGFIGF LPLDMDLEDL TMDVERLLKE GQLCLGLKEP NDIGVIKEEN NVGFEIDCKD  240
LKRVKDEEEE EAKCENGRSK DSDGEASKDE DRKTSLFLSL DYEAVITAWD NHGSPWKTGI  300
KSECLLGGNT CPSHAVGGFD ELVSTVGSVT RQQVKDGGGS DGEREARVLR YKEKRRTRLF  360
SKKIRYEVRK LNAEQRPRIK GRFVKRTSLL T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354370RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap476523
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0157400.0BT015740.1 Arabidopsis thaliana At1g73870 mRNA, complete cds.
GenBankBT0201830.0BT020183.1 Arabidopsis thaliana At1g73870 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889902.10.0zinc finger protein CONSTANS-LIKE 7
SwissprotQ9C9A90.0COL7_ARATH; Zinc finger protein CONSTANS-LIKE 7
TrEMBLD7KRN20.0D7KRN2_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh2_kg.2__1653__AT1G73870.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1750679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]