PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473005
Common NameARALYDRAFT_473005
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 429aa    MW: 47365.8 Da    PI: 5.7351
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473005genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.87e-06638335
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                 C+ ++e  + lfC+ +   lC  C ++ H 
    473005  6 RVPCDFCGERTAVLFCRADTAKLCLPCDQHVHT 38
              568*******9******************9994 PP
2zf-B_box21.54.7e-074980334
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
               ++C+++++++++  C++++  lC++C    H
    473005 49 SQICDNCGNEPVSVRCFTDNLILCQECDWDVH 80
              689************************98777 PP
3CCT64.62.9e-22380424145
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
             R +a++RYkeKrktR+++K+irYesRKa+A++R Rv+GrFvk++e
  473005 380 RGNAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASE 424
             7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-13451IPR000315B-box-type zinc finger
PROSITE profilePS501199.684451IPR000315B-box-type zinc finger
CDDcd000211.16E-8751No hitNo description
PROSITE profilePS501198.6034794IPR000315B-box-type zinc finger
CDDcd000214.63E-85180No hitNo description
SMARTSM003360.835294IPR000315B-box-type zinc finger
PROSITE profilePS5101714.951380422IPR010402CCT domain
PfamPF062031.7E-16380422IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MASSKRVPCD FCGERTAVLF CRADTAKLCL PCDQHVHTAN LLSRKHVRSQ ICDNCGNEPV  60
SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC PSALELAALW GLDLEQGRKE  120
EESQVPMMAL MMENFGMQLD SWVSGSNELI VPSDTMFKKR GSSCGRYKQV LCKQLEELLK  180
SGVVGGDDED GDGDRDRDCD REGDCDGDGE AGEGLMVPEM SERLEWSRDV EEMNGGGVNQ  240
QPLQWNATTN PSGGQSSQIW DFNLGQSRGP EDTRRMEAAD VTKGAASFTI NNFVDHMNET  300
CSTNAKGVKG ICKDDYKRST SGQVQPSKSE SNNLPITFGS EKGSNSSSDL HFTEHIAGTS  360
CKTTRLVATK ADLERLAQNR GNAMQRYKEK RKTRRYDKTI RYESRKARAD TRLRVRGRFV  420
KASEAPYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap473005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372060.0AY037206.1 Arabidopsis thaliana At1g28050/F13K9_15 mRNA, complete cds.
GenBankBT0026810.0BT002681.1 Arabidopsis thaliana At1g28050/F13K9_15 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893503.10.0zinc finger protein CONSTANS-LIKE 15
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLD7KCS10.0D7KCS1_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh2_kg.1__2959__AT1G28050.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]