PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

472205

Common Name

ARALYDRAFT_472205

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 348aa MW: 38029.5 Da PI: 6.5009

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
472205	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226.8	4.1e-70	114	276	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel......kskkqsalsstkl 91 r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWv+aakrrerq+qla + +k+ +++ ++++ +++ + ++ sal++t++ 472205 114 RQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDTnssvggdDDDDREDE--KngggddSCGGGSALACTRV 214 7899***************************************************999988877677776522222222..234666689999**** PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++s+ le s+lP+e+ss+avfrc+rvss+dd+eee+aYqtavsigGhvfkGiLydqG+++ 472205 215 VNGNSS-GLESSHLPPEISSPAVFRCMRVSSIDDEEEEYAYQTAVSIGGHVFKGILYDQGPSD 276 976.999999**********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.4E-63	117	275	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.1E-27	119	161	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.1E-27	226	274	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009299	Biological Process	mRNA transcription
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MAGLFYLGGR DHNKQDHHQD KDHNEDKSNN YLYLYKDEIY NNNKGFEIFP PQYFQQQQQQ 60 NHVAAPTNLY SFGMVPSGGI NINNNRSTNR SLYFNVVSDH EPVRSSTGGF TVTRQGNMNC 120 QDCGNQAKKD CPHMRCRTCC KSRGFDCQTH VKSTWVSAAK RRERQAQLAV LPAKRIRDTN 180 SSVGGDDDDD REDEKNGGGD DSCGGGSALA CTRVVNGNSS GLESSHLPPE ISSPAVFRCM 240 RVSSIDDEEE EYAYQTAVSI GGHVFKGILY DQGPSDHHRY SSSVNAETSQ HHLNLMDSIA 300 SAATTTAVTA VNSNNGSIDP SSIYTAVAAP FNAYVTAGTS FFAPPRS*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MAGLFYLGGR DHNKQDHHQD KDHNEDKSNN YLYLYKDEIY NNNKGFEIFP PQYFQQQQQQ  60
NHVAAPTNLY SFGMVPSGGI NINNNRSTNR SLYFNVVSDH EPVRSSTGGF TVTRQGNMNC  120
QDCGNQAKKD CPHMRCRTCC KSRGFDCQTH VKSTWVSAAK RRERQAQLAV LPAKRIRDTN  180
SSVGGDDDDD REDEKNGGGD DSCGGGSALA CTRVVNGNSS GLESSHLPPE ISSPAVFRCM  240
RVSSIDDEEE EYAYQTAVSI GGHVFKGILY DQGPSDHHRY SSSVNAETSQ HHLNLMDSIA  300
SAATTTAVTA VNSNNGSIDP SSIYTAVAAP FNAYVTAGTS FFAPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00152	DAP	Transfer from AT1G19790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	472205

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY924676	0.0	AY924676.1 Arabidopsis thaliana hypothetical protein (At1g19790) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020867750.1	0.0	protein SHI RELATED SEQUENCE 7
Refseq	XP_020867751.1	0.0	protein SHI RELATED SEQUENCE 7
Refseq	XP_020867752.1	0.0	protein SHI RELATED SEQUENCE 7
Swissprot	Q9FXH7	0.0	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	D7KI57	0.0	D7KI57_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.1__2159__AT1G19790.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-179	SHI-related sequence 7

Link Out ? help Back to Top
Phytozome	472205
Entrez Gene	9329128

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]