PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 472103 | ||||||||
Common Name | ARALYDRAFT_472103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 259aa MW: 29630.8 Da PI: 8.7694 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.3 | 2.3e-26 | 126 | 176 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s e++s yF++pi++AA+eL+++lT+LK++CR++GIkRWPhRk+ sl 472103 126 SKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSL 176 5899********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.996 | 107 | 196 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.6E-21 | 128 | 176 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MMKSFCKLEY HQVFGKEDIS FSFLNHSSLY SNQSELANPF FELEDEILPS ATSSNYFTSA 60 SSFLALPDLE PISIVSHEAD ILSLYGSASW TEEESMLDSD FAKKSETTTT KKKRCREECV 120 SSCSVSKTLS KETISLYFYM PITQAARELN IGLTLLKKRC RELGIKRWPH RKLMSLQKLI 180 SNVKEIEKME GEENEDRLRN ALEKLEKEKK TIEKLPDLKF EDKTKRLRQA CFKANHKRKR 240 RSGMSTPITS SSSSASSSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 472103 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011809 | 1e-158 | AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 1e-158 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870007.1 | 1e-169 | protein RKD1 | ||||
Swissprot | Q9M9U9 | 1e-163 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | D7KH70 | 0.0 | D7KH70_ARALL; RWP-RK domain-containing protein (Fragment) | ||||
STRING | fgenesh2_kg.1__2057__AT1G18790.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 1e-129 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 472103 |
Entrez Gene | 9329077 |