PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

472103

Common Name

ARALYDRAFT_472103

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 259aa MW: 29630.8 Da PI: 8.7694

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
472103	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.3	2.3e-26	126	176	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s e++s yF++pi++AA+eL+++lT+LK++CR++GIkRWPhRk+ sl 472103 126 SKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSL 176 5899********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.996	107	196	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-21	128	176	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MMKSFCKLEY HQVFGKEDIS FSFLNHSSLY SNQSELANPF FELEDEILPS ATSSNYFTSA 60 SSFLALPDLE PISIVSHEAD ILSLYGSASW TEEESMLDSD FAKKSETTTT KKKRCREECV 120 SSCSVSKTLS KETISLYFYM PITQAARELN IGLTLLKKRC RELGIKRWPH RKLMSLQKLI 180 SNVKEIEKME GEENEDRLRN ALEKLEKEKK TIEKLPDLKF EDKTKRLRQA CFKANHKRKR 240 RSGMSTPITS SSSSASSSS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	472103

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011809	1e-158	AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBank	CP002684	1e-158	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870007.1	1e-169	protein RKD1
Swissprot	Q9M9U9	1e-163	RKD1_ARATH; Protein RKD1
TrEMBL	D7KH70	0.0	D7KH70_ARALL; RWP-RK domain-containing protein (Fragment)
STRING	fgenesh2_kg.1__2057__AT1G18790.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-129	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	472103
Entrez Gene	9329077