PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 352841 | ||||||||
Common Name | ARALYDRAFT_352841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 694aa MW: 77012.2 Da PI: 7.8156 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.5 | 2.8e-28 | 422 | 473 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l+++F++++kdAAk++gvc+T+LKr CRq+GI+RWP+Rkik++ 352841 422 AEKDITLDTLRQHFAGSLKDAAKNIGVCPTTLKRVCRQHGISRWPSRKIKKV 473 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.450.40 | 3.9E-4 | 227 | 335 | IPR029016 | GAF domain-like |
SuperFamily | SSF55781 | 3.02E-6 | 227 | 337 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.291 | 409 | 493 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.7E-25 | 426 | 473 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.21E-20 | 595 | 686 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 6.2E-21 | 597 | 683 | No hit | No description |
PROSITE profile | PS51745 | 23.791 | 600 | 685 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.6E-25 | 600 | 685 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.9E-19 | 601 | 684 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.00E-41 | 601 | 683 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006107 | Biological Process | oxaloacetate metabolic process | ||||
GO:0006108 | Biological Process | malate metabolic process | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0050152 | Molecular Function | omega-amidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MEESNNSAVV DFPDNFMDQL LWEECSWEEE ATQNDQALSS GLKERVACAM GHLQEVMGER 60 ELLIQLWVPV ETRSGRVLST EEQPYSINTF SQSQSLGLYR DASTGYSFAA EVGSEQLVGL 120 PGRVFLRRMP EWTPDVRFFR REEYPRIRYA RRYQVRASLA LPLFQGTSGN CVAVMEMVTT 180 HRNLEYASQL HTICHTLEAF DLRTSQASIV PASLKVTSSS SSSRTEVASI LQGICSSHRL 240 PLAVTWAHQD SSSCLSALIS ASYAADQDSR CFLAACSEHH LLVGEGIAGR AFATKKQCFA 300 TDVAIFSKWS YPLSHYARMF HLHAALAVPI LTRGNRTVQF VVELFFPRDC LDIQTQSLTL 360 ASQLNLRFQS SPHLMVDDNQ IAQQVRDAAT PPLTQEDPKG KQVSFSFSSS SSLENRKRKT 420 KAEKDITLDT LRQHFAGSLK DAAKNIGVCP TTLKRVCRQH GISRWPSRKI KKVGHSLRKL 480 QVVMDSVEGV QGSLHLASFY SSFPQLQSSS SSSFPLINPT QTVHVPPKSP PSSSGSQGSS 540 GSSTCCSSEE QQLGGFENPS LSHPQLLTLS SLHEDQRAVR VTSSLPPLPS STAPRKAKDG 600 MKVKAMFGDS MLRMSLQPHS RLTDLRREIA KRFGMDDVLT SNFSLKYLDD DQEWVLLTCD 660 ADLEECIQVY KSSLKETIRI LVHRPLSLPS FGS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 352841 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069558 | 0.0 | AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence. | |||
GenBank | AL035538 | 0.0 | AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project). | |||
GenBank | AL035539 | 0.0 | AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project). | |||
GenBank | AL161593 | 0.0 | AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866792.1 | 0.0 | protein NLP3 | ||||
Swissprot | Q9SVF1 | 0.0 | NLP3_ARATH; Protein NLP3 | ||||
TrEMBL | D7MEX9 | 0.0 | D7MEX9_ARALL; RWP-RK domain-containing protein | ||||
STRING | fgenesh1_pg.C_scaffold_7000014 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15287 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38340.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 352841 |
Entrez Gene | 9302865 |
Publications ? help Back to Top | |||
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