PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 338787 | ||||||||
Common Name | ARALYDRAFT_338787 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 279aa MW: 32328.9 Da PI: 8.6292 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.9 | 1.5e-26 | 158 | 207 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk++sl 338787 158 NSLSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSL 207 67999******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.656 | 143 | 227 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.8E-22 | 160 | 207 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MADQKPLMVW SEANNYESFL QEDIFSFLDQ SLSIDPHSSF INPFKDFQTQ TWFSFQDSIV 60 NPISTTFAAD HTFLASLDLE AISSTFSLDI MSGWWNDNNG NYNNQVEPIL DDISRTNTMG 120 DPKMEKILHE DVNTTIKEKT SQKRIIMKRR YREDGDINSL SREMMKQYFY MPITKAAKEL 180 NIGVTLLKKR CRELGIPRWP HRKLTSLNAL ITNLKDLLGN TEGKTPKSKL RNALELLEME 240 KKMIEEVPDL EFGDKTKRLR QACFKAKYKQ RRLFSSSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 338787 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026640 | 1e-165 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. | |||
GenBank | CP002688 | 1e-165 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002888458.1 | 0.0 | protein RKD3 | ||||
Swissprot | Q9FGD1 | 0.0 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | D7KT00 | 0.0 | D7KT00_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_2000886 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12180 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-168 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 338787 |
Entrez Gene | 9323044 |
Publications ? help Back to Top | |||
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