PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 329983
Common NameARALYDRAFT_329983
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 331aa    MW: 36916.6 Da    PI: 5.2622
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
329983genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.42.8e-08245340
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
              e +C+ +e +++ ++C+++   lC +C +++H+       Ht++
    329983  2 EARCDYCETEKALIYCKSDLAKLCLNCDVNIHSAnplsqrHTRT 45
              579******99*********************668888889876 PP
2CCT60.74.7e-21276319144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             R++a++RYk+K+++R F K+irY+sRKa+A++R+RvKGrFvk+ 
  329983 276 RDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKSG 319
             99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
PfamPF006433.1E-6345IPR000315B-box-type zinc finger
CDDcd000218.69E-7447No hitNo description
PfamPF062033.3E-16276318IPR010402CCT domain
PROSITE profilePS5101714.436276318IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEARCDYCET EKALIYCKSD LAKLCLNCDV NIHSANPLSQ RHTRTLLCEK CFLQPTVIHC  60
MNEKVSLCQG CQWTATNCTG LGHRLQNLNP YSGCPSPSDF AKIWSSILEP SVSNWVSPFP  120
DTLLQELDDW NGSSTSVITQ TQNLKDYSSF FSMESNLPKV IEEECSGLDL CEGINLDDAP  180
LNFNASNDII GCSSLDNTKC YQYEESFKEE NNIGIPSLLL PALSGNVVPS MSISMSNITG  240
ENSATDYQDC GISPGFLIGD SPWESNVEVS FNPKSRDEAK KRYKQKKSKR MFGKQIRYAS  300
RKARADTRKR VKGRFVKSGE TFEYDPSLVM *
Cis-element ? help Back to Top
SourceLink
PlantRegMap329983
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615410.0AL161541.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973380.0Z97338.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868216.10.0putative zinc finger protein CONSTANS-LIKE 11
RefseqXP_020872286.10.0putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233790.0COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLD7MAK30.0D7MAK3_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh1_pm.C_scaffold_70022100.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.10.0B-box type zinc finger protein with CCT domain