PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 321080
Common NameARALYDRAFT_321080
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 401aa    MW: 44177.5 Da    PI: 8.0612
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
321080genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.31e-051149537
  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
               C+ ++e  + lfC+ +   lC  C ++ H+       H
    321080 11 ACEFCGERTAVLFCRADTAKLCLPCDQHVHSAnllsrkH 49
              7******99*******************99555665556 PP
2zf-B_box22.81.9e-075294339
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
               ++C++++++++   C++++  lC+dC    H +      H++
    321080 52 SQICDNCSKEPVAVRCFTDNLVLCQDCDWDVHGScsssatHER 94
              689************************9988844667777765 PP
3CCT652.1e-22355398144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             R++a++RYkeK+ktR+++K+irYe+RKa+Ae+R RvKGrFvk++
  321080 355 RDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKAT 398
             899***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-13754IPR000315B-box-type zinc finger
PROSITE profilePS501199.769754IPR000315B-box-type zinc finger
CDDcd000212.00E-81042No hitNo description
PROSITE profilePS501199.1015097IPR000315B-box-type zinc finger
CDDcd000211.23E-65483No hitNo description
SMARTSM003361.15597IPR000315B-box-type zinc finger
PROSITE profilePS5101714.852355397IPR010402CCT domain
PfamPF062031.1E-16355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGGSTRESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK  60
EPVAVRCFTD NLVLCQDCDW DVHGSCSSSA THERSAVEGF SGCPSVLELA AVWGIDLEGK  120
KKEDEEDQLT KNFGMALDSW GSGSNSGQDL IVPYDVSIKK QSFSLGRSKK VVFKQLELLK  180
RGFVGGDGGG EIMVPERING GGSICQPSPM SAESQSHCGN AMQWNATNHS STLPIIAIWD  240
FNLGQSRNPE EPSPVETKGS TFTFNEVTHV KNDTRATNVK AFKETYQQDD SIRSTSTKGQ  300
ETSKSNNIPA AIHSHKSSND SSDLHCMEHI AMTSNRATRL VAATNADLER LAQNRDNAMQ  360
RYKEKKKTRR YDKTIRYETR KARAETRLRV KGRFVKATDP *
Cis-element ? help Back to Top
SourceLink
PlantRegMap321080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935750.0AB493575.1 Arabidopsis thaliana At2g33500 mRNA for hypothetical protein, partial cds, clone: RAAt2g33500.
GenBankAC0023320.0AC002332.3 Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete sequence.
GenBankBT0020670.0BT002067.1 Arabidopsis thaliana putative CONSTANS-like B-box zinc finger protein (At2g33500) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883914.10.0zinc finger protein CONSTANS-LIKE 14 isoform X1
SwissprotO228000.0COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLD7LGB00.0D7LGB0_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh1_pm.C_scaffold_40011370.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]