PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 318927
Common NameARALYDRAFT_318927
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 378aa    MW: 41640.9 Da    PI: 6.2756
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
318927genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.7e-07242339
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htv 39
              e+kC+++   ++ ++C+++   lC++C ++ H+     H++
    318927  2 EPKCDHCATSQAVIYCKSDLAKLCQNCDFHVHSAnplsHRH 42
              689*****988********************9668888543 PP
2CCT60.36.4e-21320363144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             R +a+lRY eK+ +R F K+irY+sRKa+A++R+RvKGrFvk+ 
  318927 320 RTQAKLRYMEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAG 363
             899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-6147IPR000315B-box-type zinc finger
PROSITE profilePS501198.774147IPR000315B-box-type zinc finger
PfamPF006431.8E-5243IPR000315B-box-type zinc finger
CDDcd000211.13E-5347No hitNo description
PROSITE profilePS5101713.979320362IPR010402CCT domain
PfamPF062031.3E-15320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEPKCDHCAT SQAVIYCKSD LAKLCQNCDF HVHSANPLSH RHSRSLICQK CFSQPAVIRC  60
LGEKVSYCQR CHWHASNCSD LGHRVQRLNP FSGCPSPTDF VKMWSSILEP SVSSLVSPFV  120
GSLPLNDPNN TMFGMAKINE LDGLIGSPYS MVPHSFNVTQ NFSDQLSFFS VESKGYPDLV  180
LKLEEGEEDL CEGLNFDNAP LNFDVGDDII GCSLEEPIEP DHTVPNCLLI DKNNTSVTAS  240
NFTIDNTSAS SPGQQMNINT GLPLPLSPVL FGQIHPSLNI SNVTGESNAA DYQDCGMPPG  300
FITSEAPWES NLEVSCPQAR TQAKLRYMEK KLKRSFGKQI RYASRKARAD TRKRVKGRFV  360
KAGDNYDYDP SSPTTNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMap318927
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936260.0AB493626.1 Arabidopsis thaliana At3g21880 mRNA for hypothetical protein, partial cds, clone: RAAt3g21880.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883322.20.0zinc finger protein CONSTANS-LIKE 12 isoform X2
SwissprotQ9LJ440.0COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLD7L0Y00.0D7L0Y0_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh1_pm.C_scaffold_30019430.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]