PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Y4AFN

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 969aa MW: 107839 Da PI: 5.7784

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Y4AFN	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	582	632	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Araip.Y4AFN 582 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 632 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.621	571	652	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-25	585	632	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.41E-23	872	960	No hit	No description
SMART	SM00666	2.5E-26	874	956	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.6E-27	874	955	No hit	No description
PROSITE profile	PS51745	25.983	874	956	IPR000270	PB1 domain
Pfam	PF00564	1.3E-18	874	955	IPR000270	PB1 domain
CDD	cd06407	2.79E-37	875	955	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence Send to blast
MSESEEDKTD FASPKSKEEQ QQQSPPQLPP PSAMDFDLDL ETSWPLDHLS FVSNNPMSPF 60 LFPISSEQPS SPLWLFSDAE DERHNNTLAS APAFSDFHKI FSCDSNSVTE KPVENANDED 120 KKLLPPIVAM PPLEILDRYC VIKERMTQAL RYFKELTEQN VLAQVWAPVR NGNRFVLTTS 180 GQPFVLDPHS NGLHQYRTVS LMYVFSADGE KEESLGLPGR VYQQKVPEWT PDVQYYSTKE 240 YPRRDHAQHY NVRGTLALPV FEPSMQSCVG VLELIMTSQK INYAPEVDKI CRALEAVNLK 300 SSEILGHQYT QICNEGRQNA LAEILEILTV VCETHNLPLA QTWVPCRHRS VLAHGGGLKK 360 SCSSFDGSCM GKVCMSTTDI AFYIIDAHLW GFREACVEHH LQQGQGVAGR AFSSHSMSFC 420 RNITRFCKID YPLVHYALMF GLTSSFSICL RSSHTGDDDY VLEFFLPPRI TDFNEQKALL 480 GSILTIMKQH FQSLKIASGV ELEQNALVET IEATIEGVHL RFESIPVRQD ASPNVREELA 540 QDPSLQKIMM GCNDGGSIGD QIPSLETKNT NKPSERKRGK TEKSISLEVL QRYFAGSLKD 600 AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK RVIESVQGAE GAFTLNPLST 660 SPLPFPEHST PNKFSQQASP TEPQIRENEL DASKVLETTR IARAQCLEKM VNDKSGSIRE 720 VGKETKGPRA KSCSSADSTN PTSHGSCHGS PPIESSPVKD IFITSNNDQC VGLRSPEATM 780 QPPNNTLSYP TTCAMPDMVA TELQEPFGGM LVEDAGSSKD LRNLCPSVAE AIVEDMAPEP 840 CRTNPPFSGL APKQCMDPLK ETVTPFASRK EMKTVTIKAT YREDIIRFRV SLNCGIVELK 900 EEVAKRLKLE VGTFDIKYLD DDHEWVLIAC DADLQECIDV SRSSASNIIR VLVHEITSHL 960 GSSCESSGE

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence Send to blast

MSESEEDKTD FASPKSKEEQ QQQSPPQLPP PSAMDFDLDL ETSWPLDHLS FVSNNPMSPF  60
LFPISSEQPS SPLWLFSDAE DERHNNTLAS APAFSDFHKI FSCDSNSVTE KPVENANDED  120
KKLLPPIVAM PPLEILDRYC VIKERMTQAL RYFKELTEQN VLAQVWAPVR NGNRFVLTTS  180
GQPFVLDPHS NGLHQYRTVS LMYVFSADGE KEESLGLPGR VYQQKVPEWT PDVQYYSTKE  240
YPRRDHAQHY NVRGTLALPV FEPSMQSCVG VLELIMTSQK INYAPEVDKI CRALEAVNLK  300
SSEILGHQYT QICNEGRQNA LAEILEILTV VCETHNLPLA QTWVPCRHRS VLAHGGGLKK  360
SCSSFDGSCM GKVCMSTTDI AFYIIDAHLW GFREACVEHH LQQGQGVAGR AFSSHSMSFC  420
RNITRFCKID YPLVHYALMF GLTSSFSICL RSSHTGDDDY VLEFFLPPRI TDFNEQKALL  480
GSILTIMKQH FQSLKIASGV ELEQNALVET IEATIEGVHL RFESIPVRQD ASPNVREELA  540
QDPSLQKIMM GCNDGGSIGD QIPSLETKNT NKPSERKRGK TEKSISLEVL QRYFAGSLKD  600
AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK RVIESVQGAE GAFTLNPLST  660
SPLPFPEHST PNKFSQQASP TEPQIRENEL DASKVLETTR IARAQCLEKM VNDKSGSIRE  720
VGKETKGPRA KSCSSADSTN PTSHGSCHGS PPIESSPVKD IFITSNNDQC VGLRSPEATM  780
QPPNNTLSYP TTCAMPDMVA TELQEPFGGM LVEDAGSSKD LRNLCPSVAE AIVEDMAPEP  840
CRTNPPFSGL APKQCMDPLK ETVTPFASRK EMKTVTIKAT YREDIIRFRV SLNCGIVELK  900
EEVAKRLKLE VGTFDIKYLD DDHEWVLIAC DADLQECIDV SRSSASNIIR VLVHEITSHL  960
GSSCESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Y4AFN

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016175569.1	0.0	protein NLP7 isoform X1
Refseq	XP_025674456.1	0.0	protein NLP7 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A445BG54	0.0	A0A445BG54_ARAHY; Uncharacterized protein
STRING	GLYMA10G37860.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]