PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.R44NW

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 984aa MW: 109253 Da PI: 5.3996

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.R44NW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.3e-28	581	632	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Araip.R44NW 581 AEKMISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 632 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.439	571	652	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-26	585	632	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.13E-24	887	974	No hit	No description
SMART	SM00666	1.6E-26	889	971	IPR000270	PB1 domain
PROSITE profile	PS51745	24.21	889	971	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.8E-27	889	971	No hit	No description
CDD	cd06407	4.61E-36	890	970	No hit	No description
Pfam	PF00564	4.6E-20	890	970	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
MPDSCEEKSE LPSKSKPQEE HGFPMDFDIY LESSSWPMDH TPSASNPMSP FIITTSSEQP 60 FSPLWAFSDV EDDHRHVRVV AGDNTNTAIE TENPVENDDN KKIVSPPFVP LPPIKIPDGY 120 CLIKERMTQA LRHFKQLTEQ NFLAQVWAPV RNGNRYALTT SGQPFVLDPH SNGLHQYRTV 180 SLMYMFPVDG ENDEILGLPG RVFQQKLPEW TPNVQYYTSR EYSRRNHAQH YNVRGTLALP 240 VFESPGQSCV GVLELIMTSE KVNYAPEVDK VCKALEAVNL RSSEILEHPF AQICNEGRQN 300 ALAEILEILT VVCETHNLPL AQTWVPCRHR SVLANGGGLK KSCSSFDGHC MGRVCMSASD 360 VAFYVIDAHT WGFHDACAEH HLQQGQGVAG RAFLSHNMSF CGNITQFCKT DYPLVHYALM 420 FGLTSCFAIC LQSSHTGSDD YVLEFFLPPS ITNFYEQKDL LGSILATMKQ NFQSLKVAAG 480 VELEEGCTIE VVEPINERIH LSLESVPVAQ SAKSPQPTLN ASLNKDDGVP QGPLEQQMPA 540 WLDDINDGGN LGDNAGGSTN LMTSLEAKIK KKPSERKRGK AEKMISLEVL QRYFSGSLKD 600 AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK CVIESVQGAE GAFALNSVNK 660 DPLPIAAGSF TEPCTSKMFN RNASLSIQPS KTQINENDLD TSRVSETNRQ VRMQDQFLEG 720 EQSPEKVIHE EGWSTQEVGT KDPEKFRNLS GSSEDSANPH SHDSCHGSPP NEISPANIFR 780 PFNKEKSVPL RVSAESTMQP TNALNYANAY TALNVERTEP QEPFGRMLLE GVGSSKDLRN 840 LCPLEDQALE ACGVNPPCHD LAPKQCMMDI TLNSNNTMIP FATKKEMKSV TIKATYKEDI 900 IRFRVSLNCG IVELQEEISK RLKLEIGAFD IKYLDDDNEW VLISCDADLQ ECMDVLTSSG 960 SNMIRLVVHD TVSILGSSCE SSGN

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

MPDSCEEKSE LPSKSKPQEE HGFPMDFDIY LESSSWPMDH TPSASNPMSP FIITTSSEQP  60
FSPLWAFSDV EDDHRHVRVV AGDNTNTAIE TENPVENDDN KKIVSPPFVP LPPIKIPDGY  120
CLIKERMTQA LRHFKQLTEQ NFLAQVWAPV RNGNRYALTT SGQPFVLDPH SNGLHQYRTV  180
SLMYMFPVDG ENDEILGLPG RVFQQKLPEW TPNVQYYTSR EYSRRNHAQH YNVRGTLALP  240
VFESPGQSCV GVLELIMTSE KVNYAPEVDK VCKALEAVNL RSSEILEHPF AQICNEGRQN  300
ALAEILEILT VVCETHNLPL AQTWVPCRHR SVLANGGGLK KSCSSFDGHC MGRVCMSASD  360
VAFYVIDAHT WGFHDACAEH HLQQGQGVAG RAFLSHNMSF CGNITQFCKT DYPLVHYALM  420
FGLTSCFAIC LQSSHTGSDD YVLEFFLPPS ITNFYEQKDL LGSILATMKQ NFQSLKVAAG  480
VELEEGCTIE VVEPINERIH LSLESVPVAQ SAKSPQPTLN ASLNKDDGVP QGPLEQQMPA  540
WLDDINDGGN LGDNAGGSTN LMTSLEAKIK KKPSERKRGK AEKMISLEVL QRYFSGSLKD  600
AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK CVIESVQGAE GAFALNSVNK  660
DPLPIAAGSF TEPCTSKMFN RNASLSIQPS KTQINENDLD TSRVSETNRQ VRMQDQFLEG  720
EQSPEKVIHE EGWSTQEVGT KDPEKFRNLS GSSEDSANPH SHDSCHGSPP NEISPANIFR  780
PFNKEKSVPL RVSAESTMQP TNALNYANAY TALNVERTEP QEPFGRMLLE GVGSSKDLRN  840
LCPLEDQALE ACGVNPPCHD LAPKQCMMDI TLNSNNTMIP FATKKEMKSV TIKATYKEDI  900
IRFRVSLNCG IVELQEEISK RLKLEIGAFD IKYLDDDNEW VLISCDADLQ ECMDVLTSSG  960
SNMIRLVVHD TVSILGSSCE SSGN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.R44NW

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016204274.1	0.0	protein NLP6 isoform X1
Refseq	XP_025656859.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A444YXI9	0.0	A0A444YXI9_ARAHY; Uncharacterized protein
STRING	GLYMA09G25230.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]