PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.G39ZQ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 1034aa MW: 114825 Da PI: 8.9837

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.G39ZQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.7	1.3e-05	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g+t +qV+ +F +R + ++ Araip.G39ZQ 69 KRPRDLLNPKAVNYMQSVFSIKDAISKKESREISALFGVTVTQVRDFFNGQRSRVRR 125 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.588	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-6	68	132	IPR009057	Homeodomain-like
SMART	SM00389	0.0033	68	130	IPR001356	Homeobox domain
CDD	cd00086	4.28E-4	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-5	69	138	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MDFPNDDFLE LPIGNSAESL QRFLASQRDL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSVFSIK DAISKKESRE ISALFGVTVT QVRDFFNGQR 120 SRVRRFVLSS REKALKSNSC EEPHDELINS DPMRPINPAP LNSIMPSNAE GASCSTQDAA 180 LSDLDDLDKK FVDNIFSLME KEESFSGQEK LMEWILTIQN FSVLLWFLTR GGVMILATWL 240 SVAAVEEQTS VLLLILKVLC HLPLHKALPT HISAILPCVN RLRFYRTSDI SNRARVLLSK 300 WSKLLARDQA MKKPNGFKLS NDGQKDKIIG QIMGSESWDS NMNVHEDILA LSNDHSDNFR 360 KLESSQAVKL LPSSSDDSNK KLALGVSSSQ SNGPRERRKV QLVEQPGQKS VTRSPQATRV 420 APINQGRPMS ADDIQKAKMR ALFMQSKYAK NGSSKENKNV KIDGLHKHQT NQASIAACSA 480 KVPVPPRIED DKRTSLLPSS KATNRLETSY SKPRMDANEP VWEKCKRVQI PWKTPAEVKL 540 RDTWSVGAGE NSKEVDVQKN RNRREKETIY QTVQEIPSNP KEPWDLEMDY DDTLTLEIPI 600 EQLPDVDGAE LAFAPDEVAT HAVQGVATPS STSNVADTAQ PDLELLAVLL KNPDLVFALT 660 SGQGGSIPSE ETVKVLDMIK RGDMNLGTHD TNNGNGISAK PTEMVEVSLP SPTPSSDPRT 720 SGWSTMPPKN PFSRQSLAPA RSYPAVATTN LISQVPAIGT TVIRQQPTMA LPSSNPFTST 780 VVSSYSLPQA TIVPETEMQP PLSLSSLHVQ QTPLSDIGLT MKNKTSTNPS SVNLPGAHSP 840 LAMRVNGTSN VKPVPNMSVE DGLSNSFPQS FRLASTTPSL SATQQQQRHA HLASQQAHFP 900 EPSYRNSVHS YPPPQIEKPG QVSDSWRVRQ DVPSSSYHSN RNQNYYDNAY VGGSMQAGPS 960 WDRNNHATRE QYETWSPDNS PTRNPRYVPG RSYPESRVNQ HGRNHRPDWS RQRGSSGHWD 1020 PARQGNRKWH DERR

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MDFPNDDFLE LPIGNSAESL QRFLASQRDL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV NYMQSVFSIK DAISKKESRE ISALFGVTVT QVRDFFNGQR  120
SRVRRFVLSS REKALKSNSC EEPHDELINS DPMRPINPAP LNSIMPSNAE GASCSTQDAA  180
LSDLDDLDKK FVDNIFSLME KEESFSGQEK LMEWILTIQN FSVLLWFLTR GGVMILATWL  240
SVAAVEEQTS VLLLILKVLC HLPLHKALPT HISAILPCVN RLRFYRTSDI SNRARVLLSK  300
WSKLLARDQA MKKPNGFKLS NDGQKDKIIG QIMGSESWDS NMNVHEDILA LSNDHSDNFR  360
KLESSQAVKL LPSSSDDSNK KLALGVSSSQ SNGPRERRKV QLVEQPGQKS VTRSPQATRV  420
APINQGRPMS ADDIQKAKMR ALFMQSKYAK NGSSKENKNV KIDGLHKHQT NQASIAACSA  480
KVPVPPRIED DKRTSLLPSS KATNRLETSY SKPRMDANEP VWEKCKRVQI PWKTPAEVKL  540
RDTWSVGAGE NSKEVDVQKN RNRREKETIY QTVQEIPSNP KEPWDLEMDY DDTLTLEIPI  600
EQLPDVDGAE LAFAPDEVAT HAVQGVATPS STSNVADTAQ PDLELLAVLL KNPDLVFALT  660
SGQGGSIPSE ETVKVLDMIK RGDMNLGTHD TNNGNGISAK PTEMVEVSLP SPTPSSDPRT  720
SGWSTMPPKN PFSRQSLAPA RSYPAVATTN LISQVPAIGT TVIRQQPTMA LPSSNPFTST  780
VVSSYSLPQA TIVPETEMQP PLSLSSLHVQ QTPLSDIGLT MKNKTSTNPS SVNLPGAHSP  840
LAMRVNGTSN VKPVPNMSVE DGLSNSFPQS FRLASTTPSL SATQQQQRHA HLASQQAHFP  900
EPSYRNSVHS YPPPQIEKPG QVSDSWRVRQ DVPSSSYHSN RNQNYYDNAY VGGSMQAGPS  960
WDRNNHATRE QYETWSPDNS PTRNPRYVPG RSYPESRVNQ HGRNHRPDWS RQRGSSGHWD  1020
PARQGNRKWH DERR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.G39ZQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016205166.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
Refseq	XP_025660737.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
Swissprot	Q38796	1e-164	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A444YI75	0.0	A0A444YI75_ARAHY; Uncharacterized protein
STRING	GLYMA03G36970.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-144	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]