PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DC4LL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 914aa    MW: 99371.1 Da    PI: 6.4601
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DC4LLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR474.9e-15492530341
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  +k+CnCkkskClk+YC+Cfaag +C+++C+C++C N+ e
  Araip.DC4LL 492 CKRCNCKKSKCLKLYCDCFAAGIYCADDCSCQSCLNRPE 530
                  89**********************************876 PP
2TCR49.48.8e-16578616139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCk+s C+kkYCeC++ag+ Cs+ C+Ce+CkN 
  Araip.DC4LL 578 RHKRGCNCKRSMCQKKYCECYQAGVGCSSGCRCEGCKNV 616
                  589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.8E-14490531IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.808491618IPR005172CRC domain
PfamPF036382.2E-11493528IPR005172CRC domain
SMARTSM011147.8E-16578619IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.2E-11580615IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MIMESPEPSK NNATSSASTI NAVAINDSPQ VQESPFFRFV NNLSPIKQPA KASHVAQGFV  60
GLNSPPLVFT SPRISCHRET HLLERPSCAQ SSSRSESQSD NRGKLIEAPG DSAKSTAELP  120
PAGEFITETV KDFDVKNDAT TQHCSPPPSV DKYLVDPVDI DQMYSVNPDE KQSNDTESSP  180
SNLAQSKKSI SEVDSKDDPC DKADKPLILL EKVDKAQTGP AYVEGHDQIT GEKNDVLMAL  240
HKRMKDNNDC TSQLLPEQTL QDVKDWEDCD EMVSTSHVGA ENVSQDASEV TLKHHGLRRR  300
CLQFEEAASN ALGSDKSCMK SNAAPIKIKM VKLSEPGTSS LFTQRCSGNS TVTCPKPSGI  360
GLHLNSIVNA MPPGCAATTG IRSSDCLQGK KSALISINKV ENMKGRLTSS NIDGQSLIDS  420
GNESQANISS LPVDSFISGS HSPTEPVAIC PESLHDKRKL SPTGDGYPEE SKQPSPSKKK  480
KRASSNNDDN GCKRCNCKKS KCLKLYCDCF AAGIYCADDC SCQSCLNRPE YENKVIETRK  540
QIESRNPLAF LPKIVPQSTD RSSNNMEDAI LMTPSSARHK RGCNCKRSMC QKKYCECYQA  600
GVGCSSGCRC EGCKNVYGTK EDYVARDHVF NKERMGSRIE NEPDGAFLNK LEMVASKSDL  660
YDLPHVSPVT PSLQCSDQGK EAAKFGLHSG QHLPSSETNV DMLPSSANYN KSLENSQSVL  720
ANLETDEMLE TASYDWQVDC SDVMDQSSPC DLVANILQDT PLSNPESMSS ASLFTSSTKE  780
CGNIPLSQSQ GRIRLISGSS LRWRGSPNTP RVRLGVKHLQ SLDSESRLFD IMEDETPDVL  840
KEGLTPTKSV KANSPNQKRV SPPHSRLRGL GSSSSGGFRT GRKFILKSVP SFPPLTPCVE  900
SKDNSSEDLG NNAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1849561614121Protein lin-54 homolog
5fd3_B1e-1849561614121Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DC4LL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016162685.10.0protein tesmin/TSO1-like CXC 2
RefseqXP_025659725.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A445CW250.0A0A445CW25_ARAHY; Uncharacterized protein
STRINGGLYMA17G31399.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.13e-59Tesmin/TSO1-like CXC domain-containing protein