PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D9UVA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 534aa    MW: 58836.4 Da    PI: 5.8885
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D9UVAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-084534911854
                  HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +F++  ++yp  +e+  LA k gLt +qV++WF N R +
  Araip.D9UVA 453 MFQNflHPYPRDAEKHLLAVKSGLTRSQVSNWFINARVR 491
                  5887779******************************88 PP
2BELL26.81.3e-09351387137
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissF 37 
                  +r++ ++ k++Ll+ll+ Vd rY+q+ ++++tv+  F
  Araip.D9UVA 351 QRHAAESNKSQLLTLLQLVDSRYSQCLDEIHTVAKQF 387
                  688999***************************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0018274393IPR006563POX domain
PfamPF075264.4E-16279387IPR006563POX domain
PROSITE profilePS5007111.094432495IPR001356Homeobox domain
CDDcd000862.18E-11435496No hitNo description
SMARTSM003898.9E-6435499IPR001356Homeobox domain
SuperFamilySSF466892.52E-15436504IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-25438501IPR009057Homeodomain-like
PfamPF059201.6E-14452491IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MENDFYSSSL NMEHHPTPKP LLQCYSFDLN NQNNIINGIP MLDLDQGGVD GNSFINSSSI  60
LNSNSFVTSS QGKTTVGDTL NATGNGEFHE NLAGGTQPNG ALASPLTTIL AARIGLQENL  120
ENSATLLPSF EALGQYVFNN WHDTTSNSSP FPATFYGDRG YDEVPSNGKW SFNKFPKAPE  180
VEGSGLVPYA SIGNLDPNGW TSLNGANLAN HAYNSSSYSN ELSLSLATSP AAAQCSEISC  240
SDVSCGMNET RTGLEKGSCS SRELSMSLGS EKHVRFSPVI LGSKYLVGIQ EVLAQIAAYS  300
IENVEEVNYL GAGDRAGGNK STSGFAQKTT AATNSNANSS MFEAHAESPL QRHAAESNKS  360
QLLTLLQLVD SRYSQCLDEI HTVAKQFLER ISNHILATGT NFGESCSEDK EWSVDTSFIQ  420
KQWAIQQLKR KDQLWRPQRG LPEKSVSVLR AWMFQNFLHP YPRDAEKHLL AVKSGLTRSQ  480
VSNWFINARV RLWKPMIEEM YAEMNRRKAC RIEEGMEDGH RSRLSMNNHY FNMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A7e-15441499563Homeobox protein Meis2
4xrm_B7e-15441499563Homeobox protein Meis2
4xrs_A6e-15441498158Homeobox protein Meis1
4xrs_B6e-15441498158Homeobox protein Meis1
5bng_A6e-15441499159Homeobox protein Meis2
5bng_B6e-15441499159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D9UVA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025660064.10.0homeobox protein ATH1 isoform X1
RefseqXP_025660065.10.0homeobox protein ATH1 isoform X1
RefseqXP_025660066.10.0homeobox protein ATH1 isoform X1
RefseqXP_025660069.10.0homeobox protein ATH1 isoform X1
SwissprotP487315e-82ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A445CX790.0A0A445CX79_ARAHY; Uncharacterized protein
STRINGGLYMA17G34811.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-77homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]