PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_960_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CO-like
Protein Properties Length: 333aa    MW: 36631.7 Da    PI: 6.1734
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_960_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.7e-09436436
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                  + C+ +++  ++lfC+ ++ +lC +C +++H  
  Neem_960_f_4  4 KLCDSCKSATATLFCRADSAFLCVNCDTKIHAA 36
                  68*****************************55 PP
2zf-B_box26.21.6e-084690341
      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                   ++C+ +e+ +++  C+ +   lC +C   +H+       H++v+
  Neem_960_f_4 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVT 90
                  689*****************************6688888899886 PP
3CCT69.49.3e-24269312144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Neem_960_f_4 269 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 312
                   9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.793148IPR000315B-box-type zinc finger
SMARTSM003362.8E-15148IPR000315B-box-type zinc finger
PfamPF006434.4E-7443IPR000315B-box-type zinc finger
CDDcd000215.67E-10548No hitNo description
PROSITE profilePS5011910.2534491IPR000315B-box-type zinc finger
PfamPF006437.9E-74690IPR000315B-box-type zinc finger
CDDcd000211.08E-84791No hitNo description
SMARTSM003369.2E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658269311IPR010402CCT domain
PfamPF062031.4E-17269311IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCVNCD TKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVT VTPFYDPVNN SAVKHCGVVN FLDDERYFND  120
VDGGDVSREE AEAASWLLPN PKVVEENPDL NTGQYVFSEM DPYLDLDYGP ADPKLEAQEQ  180
NSSGTDGVVP VQSKNVDAAL SNDGCFDLDF SGSKSFGYGY NSLSHSVSSS SSMDVGVVPD  240
GSAMTDISNS YGKGGESGNQ TVQYSSADRE ARVLRYREKR KNRKFEKTIR YASRKAYAEM  300
RPRIKGRFAK RTDIEVETQR SSRIYGFGVV PSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021276035.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-143COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A061GJE10.0A0A061GJE1_THECC; CONSTANS-like 4
STRINGEOY292670.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-140CONSTANS-like 4