PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_834_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TCP
Protein Properties Length: 362aa    MW: 39873.4 Da    PI: 6.9696
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_834_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.28.6e-3251172289
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......... 88 
                    g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ ++ ++ ++  ++++  s++  +s+          
  Neem_834_f_2  51 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPVPPGNFGLNHQEILSSNDVGSShskregfrie 147
                   689*************************************************************999997775555555544222222334455555 PP

           TCP  89 ........................k 89 
                                           +
  Neem_834_f_2 148 ggninwedaeglprsnmwtadalwR 172
                   5554444444444443333333320 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-2953189IPR005333Transcription factor, TCP
PROSITE profilePS5136931.22953111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MISSSKEADS SSKQEANKSD GKIIAKGSSS SSPSPWLRLK DPRIVRVSRA FGGKDRHSKV  60
CTIRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKDEIDE LPPLPVPPGN  120
FGLNHQEILS SNDVGSSHSK REGFRIEGGN INWEDAEGLP RSNMWTADAL WRTKSKEATR  180
ETVNEKENWT KGTEEKQDVS EGGHAAEVSS INFLPRPSDS SPISLNNAMP FGSYYHLDPS  240
NFPLSQLASH GFTSQTEDLH NFNVVPLPSA LSLSSGSQIL VCPPGATQPL FPSHVEIDPR  300
QVNHLQMLSS SSHNLFSNSL TPPLHSISQS MRPFHFSMTP RTFPSQSSSG SQPDKEEEFP  360
SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1858112155Putative transcription factor PCF6
5zkt_B6e-1858112155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021297555.10.0transcription factor TCP13
RefseqXP_021297556.10.0transcription factor TCP13
RefseqXP_021297558.10.0transcription factor TCP13
RefseqXP_021297559.10.0transcription factor TCP13
TrEMBLA0A061EN211e-179A0A061EN21_THECC; Plastid transcription factor 1, putative isoform 1
STRINGEOY036991e-180(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.15e-51plastid transcription factor 1