PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_718_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CO-like
Protein Properties Length: 480aa    MW: 54517.5 Da    PI: 8.8263
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_718_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.11.7e-0880123340
      zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                   +r C+ + +k+++++C +++ +lC+ C  + H+       H++v
  Neem_718_f_2  80 ARACDSCIKKRARWYCASDDAFLCQACDCSVHSAnplarrHERV 123
                   578*****************************657888888876 PP
2CCT67.63.4e-23423466144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Neem_718_f_2 423 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 466
                   9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.75178125IPR000315B-box-type zinc finger
SMARTSM003369.4E-978125IPR000315B-box-type zinc finger
PfamPF006433.4E-780123IPR000315B-box-type zinc finger
CDDcd000216.12E-981125No hitNo description
PfamPF062038.3E-18423465IPR010402CCT domain
PROSITE profilePS5101716.083423465IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSWSQKFNLF LFSLSLNPKV HPKRRCTAKA LLWVSHKHTL PTNYNHCPVF SSIRLFLLLS  60
LPSKMISSKK VANAVGGKTA RACDSCIKKR ARWYCASDDA FLCQACDCSV HSANPLARRH  120
ERVRLKTASF KSATNAQSVP ANNDSDSVPP WHKGFTRKAR TPRYGKLKTG KSIRNNTLPL  180
VPEVGSDEIS HEENNEEDQL LYRVPVFDRF AVELRTSANS NEGEKTADQD HHVNGSESKP  240
AITTGYHRDV DSLHGFLPSD MELAEFAADV ESLLGRGFEN ESLAMEELGL VDHREKEFKE  300
SSRKIDLERE PFELNFDYDS HATCEDEEQK VIKGEITMKI NGEDNDDDAK KKRKKLLRLD  360
YEAVITAWAS QGSPWTTGDR PEFDPDEFWP DCTATCATEV HQHQPYAEFA GIGAYPGMVD  420
SGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRATSFA GPPAFPLLSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350354KKRKK
2433449RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468698.10.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-106COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A067GBM40.0A0A067GBM4_CITSI; Uncharacterized protein
STRINGXP_006468698.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-104B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]