PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3947_f_8
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TCP
Protein Properties Length: 481aa    MW: 53624.6 Da    PI: 9.1814
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3947_f_8genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP146.51.9e-451092622134
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssa 82 
                    +gkkdrhski+T+ g+RdRR+Rls+++a+rfFdLqd+LGfdk+s+tieWL+ ++ +aikelt++               ss+s+se+         
  Neem_3947_f_8 109 TGKKDRHSKIYTANGPRDRRMRLSLKIARRFFDLQDMLGFDKASNTIEWLFSKSMAAIKELTESlpsmknsctggaksfSSTSESEV--------- 195
                    79**************************************************************66666665554443322222222......... PP

            TCP  83 snsssg...................kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                                             +++  + k+  ++ks +   n+   esr+karararert ekm++k 
  Neem_3947_f_8 196 -----VsgikttedirdqksapagaESSVGTSKGAMNRKSRKPIVNPIVrESRNKARARARERTIEKMKMKG 262
                    .....122233333444455556665555555666666655555555555********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-45109261IPR005333Transcription factor, TCP
PROSITE profilePS5136934.535111169IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.736240257IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLPSSSNRDH FPFTNQSMLG SPFNNKNPSS SKGHHPSPLL HFSESFIADD NELFMSHFSS  60
QPQILGSSSN HAPEAEIKTA SPVKETKKTT KRKKDASYVE KQTVPRRRTG KKDRHSKIYT  120
ANGPRDRRMR LSLKIARRFF DLQDMLGFDK ASNTIEWLFS KSMAAIKELT ESLPSMKNSC  180
TGGAKSFSST SESEVVSGIK TTEDIRDQKS APAGAESSVG TSKGAMNRKS RKPIVNPIVR  240
ESRNKARARA RERTIEKMKM KGLEKSNNCS EEANPNDLEQ LRSSSPLQTA ENFGSPSQEK  300
NPSLKVVAEE EEESCMIHLK ENQMDSVSII EKFLGITASP RSSSIFDYTQ NIGESSGANS  360
QQNNFVYAGT WENADSDRVQ YSYWGMTSMK GSTGNLQAQN SGAIFRIYPD AQEPKYRSIY  420
INSATANERN PNSNFKALSD DHEQKPSSVV MTTSDVDSQP HFLEDQFSCN AIVDNKYCSL  480
Y
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437744.10.0transcription factor TCP12
TrEMBLV4VET51e-180V4VET5_9ROSI; Uncharacterized protein
STRINGXP_006437744.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-37TCP domain protein 12