PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3607_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TCP
Protein Properties Length: 479aa    MW: 53338.8 Da    PI: 9.8355
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3607_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.41.8e-36932502134
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssss 81 
                     g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                               s
  Neem_3607_f_1  93 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnssfpdtpkqlsdekrA--------------S 174
                    689*************************************************************66444333322222210..............1 PP

            TCP  82 asnsssg...................kaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                    ++n+++g                   ++ +++a+s++s++s+ s l+l++      r kar+rarer ++++ ++n
  Neem_3607_f_1 175 EGNDQQGfdsveldgdpnyqqnqsqhRSLSKSACSSNSETSKGSGLSLSRsdvrVNRVKARKRARERAAKEKEKEN 250
                    1111111333444444444444455477777778888888888888888864445569********7777666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-4294248IPR005333Transcription factor, TCP
PROSITE profilePS5136931.34595153IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.527228246IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEFCLICWFF LTGIIRVKLQ SSSTSSEVQI CEQTRRSKDL VIRTEESFKY QDVTEKEKQK  60
GWLRSANRGD NTGANRLRGW HHSSRIIRVS RASGGKDRHS KVWTSKGLRD RRVRLSVTTA  120
IQFYDLQDRL GYDQPSKAVE WLIKAAADAI AELPSLNSSF PDTPKQLSDE KRASEGNDQQ  180
GFDSVELDGD PNYQQNQSQH RSLSKSACSS NSETSKGSGL SLSRSDVRVN RVKARKRARE  240
RAAKEKEKEN ESRINANQQQ HQNVNPISQS STFTELLTTG IGSVNMNNNT SPTGSSQPNE  300
EPNFFHKATT ARPWPATPMD YFNTGLLGTS TSRPHHFSGQ IQLGNSNTIP QIPPFSVSNE  360
NHQEMQHFSF VPDHLIPVTA TQPGPGGDYN LNFTISSGLA GFNRGTLQSN SSPSLLPHLQ  420
RFGSSSPIDG SNLPFFVGTT PPVENHHHHH QFTAGFDGRL QLYYGDGSRH SDQKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-23100154155Putative transcription factor PCF6
5zkt_B3e-23100154155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3475453e-36KP347545.1 Prunus pseudocerasus MADS-box protein SOC1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045831.10.0transcription factor TCP2
RefseqXP_024045832.10.0transcription factor TCP2
RefseqXP_024045833.10.0transcription factor TCP2
TrEMBLV4W7U20.0V4W7U2_9ROSI; Uncharacterized protein
STRINGXP_006449018.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-76TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2