PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3422_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 566aa    MW: 62416.3 Da    PI: 6.9203
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3422_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.8e-12245301155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Neem_3422_f_3 245 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 301
                    78*******************433.44555535555.779999**************98 PP
2AP248.12.9e-15344395155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Neem_3422_f_3 344 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 395
                    78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-15245311IPR016177DNA-binding domain
PfamPF008474.9E-9245301IPR001471AP2/ERF domain
CDDcd000183.31E-18245311No hitNo description
PROSITE profilePS5103217.332246309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12246310IPR001471AP2/ERF domain
SMARTSM003805.1E-23246315IPR001471AP2/ERF domain
PRINTSPR003671.3E-6247258IPR001471AP2/ERF domain
PfamPF008475.7E-10344395IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18344405IPR016177DNA-binding domain
CDDcd000183.66E-24344405No hitNo description
Gene3DG3DSA:3.30.730.101.3E-18345403IPR001471AP2/ERF domain
SMARTSM003803.6E-34345409IPR001471AP2/ERF domain
PROSITE profilePS5103219.006345403IPR001471AP2/ERF domain
PRINTSPR003671.3E-6385405IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MSNWLGFSLS PHLRIDEGFA AAAAGREEQE QNCFATQHHH ESPLSVMPLR SDGSLCVVEP  60
FRRPSQDWRY ENGATEEGPK LEDFLGCCYS NSPSTAAADD TTKVYCQNRE KGNQHDACPR  120
INVNTEPSFN INGDLETTQN LANPSAHVPF ESATTVSGFK SWLRQTPFSS GEKSAATNNH  180
EANNCGFQSL SLAMNPSSSE QNGGNMVAIS PSQGAVDSRK RHGGKAPTRE PVPRKSIDTF  240
GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQG GYDKEEKAAR AYDLAALKYW  300
GPTTHINFPL SNYEKELEEM KHMTRQEFVA NLRRKSSGFS RGASVYRGVT RHHQHGRWQA  360
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTSAVT NFDISRYDVR RICSSSTLIA  420
SDLAKRSPKD SASLGPEEYN SCASSTSPQP FLAISSGEAS DELVDMMLSA NSDDHQHQNA  480
NTNNDASLVA PRSSRNSSNP QSPKCSVGLA SEFGIGGSDY SQGYFSVQGQ KNEDGDDRSD  540
HGNESNNRLV NLGLVHQVPM FALWND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4680359e-31AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294035.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-138AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A061GBL40.0A0A061GBL4_THECC; AP2 domain-containing transcription factor
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-135AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]