PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_34205_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CO-like
Protein Properties Length: 463aa    MW: 52558.2 Da    PI: 8.5294
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_34205_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.7e-084992340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + +k+++++C +++ +lC+ C  + H+       H++v
  Neem_34205_f_1 49 ARACDSCIKKRARWYCASDDAFLCQACDCSVHSAnplarrHERV 92
                    578*****************************657888888876 PP
2CCT67.73.2e-23406449144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Neem_34205_f_1 406 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 449
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7514794IPR000315B-box-type zinc finger
SMARTSM003369.4E-94794IPR000315B-box-type zinc finger
PfamPF006433.2E-74992IPR000315B-box-type zinc finger
CDDcd000218.47E-95094No hitNo description
PROSITE profilePS5101716.083406448IPR010402CCT domain
PfamPF062038.0E-18406448IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSWSQKFNLF LFSLSLNPKV HPKRRCTAKA LLWMISSKKV ANAVGGKTAR ACDSCIKKRA  60
RWYCASDDAF LCQACDCSVH SANPLARRHE RVRLKTASFK SATNAQSVPA NNDSDSVPPW  120
HKGFTRKART PRYGKLKTGK SIRNNTLPLV PEVGSDEISH EENNEEDQLL YRVPVFDRFA  180
VELRTSANSN EGEKTADQDH HVNGSESKPA ITTGYHRDVD SLHGFLPSDM ELAEFAADVE  240
SLLGRGFENE SLAMEELGLV DHREKEFKES SRKLCFCRIS AAVKHDQIDL EREPFELNFD  300
YDSHATCEDE EQKVIKGEIT MKINGEDNDD DAKKKRKKLL RLDYEAVITA WASQGSPWTT  360
GDRPEFDPDE FWPDCTATCA TEVHQHQPYA EFAGIGAYPG MVDSGREARV SRYREKRRTR  420
LFSKKIRYEV RKLNAEKRPR MKGRFVKRAT SFAGPPAFPL LSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333337KKRKK
2416432RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468698.10.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-108COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A067GBM40.0A0A067GBM4_CITSI; Uncharacterized protein
STRINGXP_006468698.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-106B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]