PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22949_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | TCP | ||||||||
Protein Properties | Length: 310aa MW: 33465.9 Da PI: 10.2831 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.8 | 4.7e-39 | 85 | 167 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+ s+s+++ Neem_22949_f_1 85 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGGSVSQGA 167 789******************************************************************88854444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-31 | 90 | 174 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 91 | 145 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MVSWSGLEAT PLAIPGEIEL AKLGKENETF KRTWRKLGRI KMQREMIELE LQHMEMERGN 60 RERSVPRGEN WAVKNKEEQS KKQLAPKRSS NKDRHTKVEG RGRRIRMPAL CAARIFQLTR 120 ELGHKSDGET IQWLLQQAEP SIIAATGTGT IPASALAAAG GSVSQGASLT AGLHQKIDDL 180 GGSSIGGSSR TSWSMVSNNL GRSHQMATGL WPPISGFGFQ SSSSGPSTGN LGTDNSNYLQ 240 KMGFPGFDLP GTNMGPMSFT SILGGASNQQ LPGLELGLSQ DGHIGVLNPQ ALNQIYQQMG 300 QARVELCTAK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628530.1 | 1e-133 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 2e-77 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2C9V0Q5 | 1e-131 | A0A2C9V0Q5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012485m | 1e-132 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 9e-67 | TCP family protein |