PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20955_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 321aa    MW: 36144.8 Da    PI: 9.1207
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20955_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.44e-55101371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhP+deel+++yL +k+++ +++  ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++
  Neem_20955_f_1  10 LPPGFRFHPSDEELITYYLVNKISDANFTG-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 103
                     79*************************999.89***************99999****************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++elvg+kktLvfy+grap+gekt+Wvmheyr+
  Neem_20955_f_1 104 vTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 137
                     89999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-638158IPR003441NAC domain
PROSITE profilePS5100560.66510158IPR003441NAC domain
PfamPF023652.4E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEGDKKEETL PPGFRFHPSD EELITYYLVN KISDANFTGR AIGDVDLNKC EPWDLPGKAK  60
MGEKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSVTSELVG MKKTLVFYRG  120
RAPRGEKTNW VMHEYRIHSK SAFRTSKDEW VVCRVFQKSA GAKKFPTNQS RAVNPGYNFD  180
IGPSVIPSQM MPAENYQFPM GRNYMGNADQ IAELTRMFRG GASTSVNLPI QSQMNYPLGG  240
GFTISGLNLN LGGATTQPVL RQMPPPQAMN QQDVTSSMLT SGTTFAAETG YAAEINNANA  300
HGNRYMSMDN CMDLDNYWPP Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-56916416171NO APICAL MERISTEM PROTEIN
1ut4_B3e-56916416171NO APICAL MERISTEM PROTEIN
1ut7_A3e-56916416171NO APICAL MERISTEM PROTEIN
1ut7_B3e-56916416171NO APICAL MERISTEM PROTEIN
3swm_A4e-56916419174NAC domain-containing protein 19
3swm_B4e-56916419174NAC domain-containing protein 19
3swm_C4e-56916419174NAC domain-containing protein 19
3swm_D4e-56916419174NAC domain-containing protein 19
3swp_A4e-56916419174NAC domain-containing protein 19
3swp_B4e-56916419174NAC domain-containing protein 19
3swp_C4e-56916419174NAC domain-containing protein 19
3swp_D4e-56916419174NAC domain-containing protein 19
4dul_A3e-56916416171NAC domain-containing protein 19
4dul_B3e-56916416171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450119.10.0protein CUP-SHAPED COTYLEDON 1
RefseqXP_006483615.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ24e-82NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A067FUX40.0A0A067FUX4_CITSI; Uncharacterized protein
TrEMBLA0A2H5NWK30.0A0A2H5NWK3_CITUN; Uncharacterized protein
TrEMBLV4WAJ80.0V4WAJ8_9ROSI; Uncharacterized protein
STRINGXP_006483615.10.0(Citrus sinensis)
STRINGXP_006450119.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68512841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-125NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]