PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10647_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CO-like
Protein Properties Length: 383aa    MW: 42896.5 Da    PI: 6.3433
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10647_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-071654537
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     C+ ++ k + l+C+ ++  lC  C +  H+       H
  Neem_10647_f_1 16 PCDFCNTKLAVLYCQADSAKLCLFCDQRVHSAnalslkH 54
                    6**************************999555666666 PP
2zf-B_box17.49e-0658102442
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     ++C+++  ++++  C + + +lC+dC   +H++      H+++p+
  Neem_10647_f_1  58 QICENCITEPVSVRCSTENLMLCQDCDWDSHSNcsvsclHERSPV 102
                     79*****************************88999999998875 PP
3CCT64.92.3e-22333377145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     R +a+lRYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk++e
  Neem_10647_f_1 333 RGNAMLRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKASE 377
                     7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-91259IPR000315B-box-type zinc finger
PfamPF006438.2E-61656IPR000315B-box-type zinc finger
CDDcd000213.21E-61647No hitNo description
PROSITE profilePS501199.2861759IPR000315B-box-type zinc finger
PROSITE profilePS501198.9355102IPR000315B-box-type zinc finger
CDDcd000216.62E-459102No hitNo description
PROSITE profilePS5101714.862333375IPR010402CCT domain
PfamPF062032.5E-16333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEKGSRLKPG SFMLAPCDFC NTKLAVLYCQ ADSAKLCLFC DQRVHSANAL SLKHVRTQIC  60
ENCITEPVSV RCSTENLMLC QDCDWDSHSN CSVSCLHERS PVEGFSGCPS VIELAAFSDL  120
DIKAENLMNM GSGFGVYEPK ILNSQELVVP EQSCSVFVSC GNYKQEVYEQ LMEMGKTDLV  180
IFNGDGDQLG PGTPPSRCSQ QGHTESLEVE NIDKEELLHQ QTPFSSLLMF PPNTDLRDND  240
CSFLEGDLTW VSNAAYQTAQ NHHTQPLSSQ RPTIEECNTI PTIGPKLDCK PVKSETWKST  300
EAVRAMHQST LNGSETAKGA KPKVDIELLA QNRGNAMLRY KEKKKNRRYD KHIRYESRKA  360
RADTRKRVKG RFVKASETYD VEI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446976.10.0zinc finger protein CONSTANS-LIKE 14 isoform X2
RefseqXP_006468864.10.0zinc finger protein CONSTANS-LIKE 14-like isoform X1
TrEMBLA0A067E6A70.0A0A067E6A7_CITSI; Uncharacterized protein
STRINGXP_006468864.10.0(Citrus sinensis)
STRINGXP_006446976.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.25e-79B-box type zinc finger protein with CCT domain