PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10483_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WOX
Protein Properties Length: 250aa    MW: 28197.3 Da    PI: 7.6064
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10483_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-201877357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++tkeq++ Le+l+ +  r+psae++++++++l    +++ ++V++WFqN++a++++
  Neem_10483_f_2 18 SRWNPTKEQINMLESLYGQgIRTPSAEQIQQITSRLraygHIEGKNVFYWFQNHKARQRQ 77
                    7*****************99**************************************97 PP
2Wus_type_Homeobox115.33e-371779365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RW+Pt+eQi++Le+ly +G+rtP++e+iq+it++L++yG+ie+kNVfyWFQN+kaR+rqkq
     Neem_10483_f_2 17 SSRWNPTKEQINMLESLYGQGIRTPSAEQIQQITSRLRAYGHIEGKNVFYWFQNHKARQRQKQ 79
                       79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.6731378IPR001356Homeobox domain
SMARTSM003891.4E-41582IPR001356Homeobox domain
SuperFamilySSF466892.61E-121784IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-81877IPR009057Homeodomain-like
PfamPF000462.3E-181877IPR001356Homeobox domain
CDDcd000866.84E-61979No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEGDNIDMAS SGGTLASSRW NPTKEQINML ESLYGQGIRT PSAEQIQQIT SRLRAYGHIE  60
GKNVFYWFQN HKARQRQKQK QERMAFINRY LHKAQPVFPP CTNVVCGSYY LPRNDLGFYP  120
QCTKVLLPSG SKRRARTEEI EKTISYVGSG YDPEQKEYNV MMHANNINDG FIDHNYGNNN  180
EETLPLFPLH PTGILQGRTS TMLSHASKSA ENSIAPSSLS AETNTGTENG SGEQPFFDFF  240
SGRRCESADH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424801.21e-117WUSCHEL-related homeobox 2
SwissprotQ6X7K13e-58WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A2H5NDJ21e-119A0A2H5NDJ2_CITUN; Uncharacterized protein
STRINGXP_006424801.11e-116(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-53WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]