PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021998-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 373aa    MW: 43168.4 Da    PI: 6.9103
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021998-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-111652303499
                      SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  34 ktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + + ++d +g sW++ +   + +   + lt GW +Fvk ++L +gD+++F+l++ s+ e++v+++r+
  AHYPO_021998-RA 165 QYILVNDIHGTSWKIMFHSLGFPTYcTRLTHGWYDFVKIKNLIAGDSIIFMLKK-STNEYFVGIRRT 230
                      368899***********66444444567***********************987.88889****996 PP
2Auxin_resp48.53.7e-17244330183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeted..sserrl.sGtvvg.vsdldpvrWpnSkWrsLk 83 
                      a++++++++ FevvY+P  + +eFvv+ ekv +al+v++   m +k+a+e      + +r+ +G +   v+  +   Wp+S Wr+L+
  AHYPO_021998-RA 244 AIEKVRNMKSFEVVYYPNLGLPEFVVPKEKVDDALHVHWRRKMSVKIAYEDFRctTPVKRWfYGYILKeVNLKKDWFWPKSSWRMLQ 330
                      5678999******************************************9765115667888**9976166667789********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-13143229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-7147229No hitNo description
Gene3DG3DSA:2.40.330.105.4E-8164230IPR015300DNA-binding pseudobarrel domain
PfamPF023624.2E-9165230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039167231IPR003340B3 DNA binding domain
PfamPF065072.7E-14244330IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MASSTSNQPE KDEGLTWEDI LNAMNYYEIC DQLGSSSSNE REIDQEMGRH IAGNLVDIPK  60
LNSLVYYFPQ GHIEHVQEGV LHPVRYGSFL CRVANVSFHA DPQTDQVFVK FLLEPWITNG  120
YPNPNPNPSP NPSPIQMGGN DNNDIVSFVK VLSNTDFPKS IKVNQYILVN DIHGTSWKIM  180
FHSLGFPTYC TRLTHGWYDF VKIKNLIAGD SIIFMLKKST NEYFVGIRRT VLNKPISVKD  240
VEDAIEKVRN MKSFEVVYYP NLGLPEFVVP KEKVDDALHV HWRRKMSVKI AYEDFRCTTP  300
VKRWFYGYIL KEVNLKKDWF WPKSSWRMLQ VQWNVRPDIL KNMPNMQMNM SPWEVEVLQP  360
SHEELALSNN SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A5e-264535821355Auxin response factor 1
4ldw_A5e-264535821355Auxin response factor 1
4ldw_B5e-264535821355Auxin response factor 1
4ldx_A4e-264535821355Auxin response factor 1
4ldx_B4e-264535821355Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-43auxin response factor 17