PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021523-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

HSF

Protein Properties

Length: 494aa MW: 55214.9 Da PI: 5.3492

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021523-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.1	8.9e-36	29	120	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++++ ++sws+n+nsfvv++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll+ AHYPO_021523-RA 29 FLNKTYDMVDDPSTDAVVSWSANNNSFVVWNVPEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLK 113 9**************************************************************999.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 i r+ks AHYPO_021523-RA 114 GISRRKS 120 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.9E-38	23	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.3E-60	25	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.77E-34	26	118	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.5E-20	29	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.4E-31	29	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-20	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	68	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-20	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MGESTSTVTM AASNSDGSVN HLNNLPAPFL NKTYDMVDDP STDAVVSWSA NNNSFVVWNV 60 PEFARDLLPK FFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH LLKGISRRKS 120 VHAHSHPQQS PIQTASVKSC VEVGKFGLEE EVDRLKRDKN ILMQELVRLR QQQQSTDNQL 180 QTAGQRIQVM EQRQQQMMSF LAKAMHRPGF LAQLVQPKND GNRHVTGVNK KRRLPNDDEE 240 NATMGNLNGS PLDGQIVKYQ PLINEAGKSM LREILKLSEN SRLDQSPKDP NTFLLDHVPA 300 VPNVIDCSSS STRTSGVTLS EVAQCSKPPI FVDEARCSSN LALKSEMHTS CPVIREPAKE 360 VGISAADLSR SQDDTLLSDF NQVQGILSQC SVDMPFSVTL NPDLGFTDSL STVLNEALPM 420 DSEVYPPRHL PVSGDAFWEQ FFMSETVEEV DSSTPEVSIS KEPEIHQEER EKLHHVNNLN 480 EQMDLLAAEL DKV*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MGESTSTVTM AASNSDGSVN HLNNLPAPFL NKTYDMVDDP STDAVVSWSA NNNSFVVWNV  60
PEFARDLLPK FFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH LLKGISRRKS  120
VHAHSHPQQS PIQTASVKSC VEVGKFGLEE EVDRLKRDKN ILMQELVRLR QQQQSTDNQL  180
QTAGQRIQVM EQRQQQMMSF LAKAMHRPGF LAQLVQPKND GNRHVTGVNK KRRLPNDDEE  240
NATMGNLNGS PLDGQIVKYQ PLINEAGKSM LREILKLSEN SRLDQSPKDP NTFLLDHVPA  300
VPNVIDCSSS STRTSGVTLS EVAQCSKPPI FVDEARCSSN LALKSEMHTS CPVIREPAKE  360
VGISAADLSR SQDDTLLSDF NQVQGILSQC SVDMPFSVTL NPDLGFTDSL STVLNEALPM  420
DSEVYPPRHL PVSGDAFWEQ FFMSETVEEV DSSTPEVSIS KEPEIHQEER EKLHHVNNLN  480
EQMDLLAAEL DKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-25	23	118	15	120	Heat shock factor protein 1
5d5u_B	1e-25	23	118	24	129	Heat shock factor protein 1
5d5v_B	1e-25	23	118	24	129	Heat shock factor protein 1
5d5v_D	1e-25	23	118	24	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021725834.1	0.0	heat stress transcription factor A-1e-like
Refseq	XP_021725835.1	0.0	heat stress transcription factor A-1e-like
Swissprot	Q84T61	1e-147	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A0K9RLV2	0.0	A0A0K9RLV2_SPIOL; Uncharacterized protein
STRING	XP_010671101.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-113	heat shock factor 3

Link Out ? help Back to Top
Phytozome	AHYPO_021523-RA

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]