PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018824-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 379aa    MW: 43321.4 Da    PI: 6.1071
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018824-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.18.8e-36431342102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d+++++++sw++ g+sfvv+d++ fa+++Lp+ Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F kg+k+ll+
  AHYPO_018824-RA  43 FLTKTYEMVDDPSTDNIVSWNRGGHSFVVWDPHAFASSLLPRNFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFVKGQKQLLK 127
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k+
  AHYPO_018824-RA 128 SIRRRKH 134
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3836127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-6039132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.5E-3243132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNPFYQVKEE YPESSSSFPG EGLINFPTPQ PREGLHEVGP PPFLTKTYEM VDDPSTDNIV  60
SWNRGGHSFV VWDPHAFASS LLPRNFKHNN FSSFVRQLNT YGFRKIDPDR WEFANEGFVK  120
GQKQLLKSIR RRKHLSNSCS SQQGVIDPCV ELGRFGLDGE VDRLKRDKQV LMMELVKLRQ  180
HQQNTRAYLQ AMEQRLQVTE MKQQQMMNFL ARAMQNPSFL QQLVQQKERR KKLEEALSKK  240
RRRPIDQGQK SNLLRGESSN ENVVGMGHVK VEPIDFVGSY SYDHHHTHEG FSELEALALE  300
MQGFGKVGTE QGEVQDGSLD QFDGDDKELD EEFWEELLNE RFKALNDHGN RENVEDVNVL  360
ADRLGYLGSG SGSGSSPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-244113218120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228242RRKKLEEALSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021770292.10.0heat stress transcription factor A-2c-like
RefseqXP_021770293.10.0heat stress transcription factor A-2c-like
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0K9QYB21e-177A0A0K9QYB2_SPIOL; Uncharacterized protein
STRINGXP_010679125.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-124heat shock transcription factor A6B