PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018276-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 786aa    MW: 87855.9 Da    PI: 4.056
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018276-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.9e-14117204998
                      HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++++  ++ k++a+++  g + e++++++++d +g+ We+ l + + ++++++t++W eF + ++Lk+gD++v++l++ s+ e +++++r
  AHYPO_018276-RA 117 PFTALNFYTITKDCANRIfpG-I-ESGRKIRITDIHGENWEFML-VPGVRDSMMFTTNWPEFLRIKKLKAGDTIVLMLKE-STNEHFIGIRR 204
                      556667789999***999844.4.47789***************.56666779************************987.66667899987 PP
2Auxin_resp53.31.2e-18223305183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+++a++k+ Fe vY+P  + +eFvv +ekv++a++v +   m++k+  e+   +++ +  G + +v++ d+ +Wp+S Wr+L+
  AHYPO_018276-RA 223 AIEKAANKESFEAVYYPTPGLPEFVVAAEKVKAATDVGWRREMKVKIGNESGGEPRKYWyHGKILDVNH-DNGSWPDSLWRMLQ 305
                      678999****************************************************99********9.999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-13103203IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.066109206IPR003340B3 DNA binding domain
SMARTSM010192.8E-4110205IPR003340B3 DNA binding domain
PfamPF023621.6E-11115205IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-12120200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-10125204No hitNo description
PfamPF065071.6E-15223305IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MASSTNQRVI EPEIWQACAG ILIEIPKLDS LVYYFPQGHI EHASSTVTLS SSPVRSVLCR  60
VANVLLLADP DTDQAYAKFL LEPWNNCKMS NSGSNLIKID QKSIKNVLSF SNVFKPPFTA  120
LNFYTITKDC ANRIFPGIES GRKIRITDIH GENWEFMLVP GVRDSMMFTT NWPEFLRIKK  180
LKAGDTIVLM LKESTNEHFI GIRRGVNWST RAGRNSANEV ENAIEKAANK ESFEAVYYPT  240
PGLPEFVVAA EKVKAATDVG WRREMKVKIG NESGGEPRKY WYHGKILDVN HDNGSWPDSL  300
WRMLQVEWNV GPEVLAKMRI MQKYMSPWEL EVEPSDEPDV PHMNIMNSDT DTTSCTSKDC  360
ENVERQVSIS DDMEAVNLPA SGKPAEPKTT IMNDDSNTIC SSFEDHENVE RQDNISDDVE  420
AVNLPASDEP AEPKMTITDG DSDTTYNSFE DFELVEMQDY TSDGMEAVNP QASDEPAEPK  480
TTIMDGDSDT DTTYCSFEAL GNVERQDITS DDMKAVNLQV RDEPVEPKTT IMDGDTDTTY  540
NSLEDLENVE RQDYISGDVE AVNLQARDEP VEPKTTIMDG DTDTTYSSFE HLENVERQYN  600
TLDNIEAMNL QASVEPTVPK TTIMNKNTDS TCSSSEDHDN MERQDNTLDD MEAVNLQASD  660
APAVPKTTIM NESTDTTCSS FENHDNVKRQ DNTSDDTETM NMEVSDEPSV PKTTIIYNTT  720
DTTCNSSDDH DNVDRQDNIS DDMKAVNGLP TNNEPADTDS TLDSMEACDY CRCVCAPRNL  780
ACIVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-29330944371Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.18e-49auxin response factor 17