PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018275-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 367aa    MW: 41868 Da    PI: 7.8807
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018275-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.5e-111292141699
                      EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      l + k   +++  +++++ +  ++  d +g+ W++ l+  ++k +r+  ++GW +F+k ++L  +D++vF l++ s+ e++v+++r+
  AHYPO_018275-RA 129 LFVTKALGDNIfsKLPQNPPEIIRWIDVHGKIWNIMLQLkDGKLRRCCYAGGWCNFAKIKNLTPRDSIVFLLNK-STNECHVGIRRA 214
                      5555555544466444445557999************887888999999**********************977.89999****996 PP
2Auxin_resp31.11e-11228313183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpv.rWpnSkWrsLk 83 
                      a+++a++++ FevvY+P ++ +eFvv+  kv +a ++ +   m + +  e      +++   G    ++ l+   +Wp+S Wr+L+
  AHYPO_018275-RA 228 AIKKAQEMKSFEVVYYPIVGFPEFVVSKVKVDNARRIVWRCNMPVMFPCEFGGLGPIKQwhNGRLLNIKPLKWWhNWPDSWWRVLE 313
                      5788999***************************************9999999876665589******99886427*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-11112215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-10113213IPR015300DNA-binding pseudobarrel domain
CDDcd100178.57E-7114213No hitNo description
PROSITE profilePS508638.924114215IPR003340B3 DNA binding domain
SMARTSM010190.0068116215IPR003340B3 DNA binding domain
PfamPF023623.0E-8125214IPR003340B3 DNA binding domain
PfamPF065074.7E-9229312IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MASSSSSSNQ EREVNQELWQ ACAGVDVDVP KLNSLVYYFP KDHFDHSSSS LDEFACGSFL  60
CRVTNVSFHA NPQTDQVFVK FLLQPCNIDD PSKNPDPNPN PNPIQNQIHN NATFTLVKVL  120
SMSDIQDGLF VTKALGDNIF SKLPQNPPEI IRWIDVHGKI WNIMLQLKDG KLRRCCYAGG  180
WCNFAKIKNL TPRDSIVFLL NKSTNECHVG IRRAVINRPI SGKDIKDAIK KAQEMKSFEV  240
VYYPIVGFPE FVVSKVKVDN ARRIVWRCNM PVMFPCEFGG LGPIKQWHNG RLLNIKPLKW  300
WHNWPDSWWR VLEVEWLIDS EILEEKPHLQ KNMSPWELYV LPSDQVSGVP TTSIMEKNTS  360
CSSSYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A8e-2613431357Auxin response factor 1
4ldy_B8e-2613431357Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-32auxin response factor 17