PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017697-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CPP
Protein Properties Length: 543aa    MW: 59354.7 Da    PI: 6.9544
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017697-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.41.3e-13111149241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      ++k CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ +
  AHYPO_017697-RA 111 KQKLCNCKNSRCLKLYCECFASGVYCDG-CNCNNCCNNVD 149
                      7899************************.********986 PP
2TCR53.25.9e-17194233140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgCnCkks ClkkYCeCf+a+  Cs++C+C dCkN e
  AHYPO_017697-RA 194 KHNKGCNCKKSGCLKKYCECFQANILCSDNCRCIDCKNIE 233
                      589***********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.9E-12110150IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.809111234IPR005172CRC domain
PfamPF036388.6E-10113147IPR005172CRC domain
SMARTSM011147.0E-20194235IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.6E-13197232IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEERIKGGSL PPKSTMTADF PAKKLARQLD FTFVNGASQL PSTSVARPLY TLAAQPFPIL  60
PSSQPQLVMI GSLPQTLAQT PPVTPIRSIK TESPSPRLRS NAEVKDGTPR KQKLCNCKNS  120
RCLKLYCECF ASGVYCDGCN CNNCCNNVDN EVVRREAVEA TLERNPNAFK PKIASSPQGK  180
NNNMEDTGDV LVAKHNKGCN CKKSGCLKKY CECFQANILC SDNCRCIDCK NIEGREEWHD  240
LSRDNHVNNS TYVHEAAHAS ITGAIASSGY ISTLISRKWN GQELLFGKTL KSLLADIIQP  300
QDVEELCSVL VEFSEDAKTI AESKSADENQ EEAGKTSQAL RTKNRYQNQG EMSDLKPTLD  360
TSRNQTNRNG PDAFNLDGYD LPNSRPMSPL TLALRCDEQD AMFVADGSSN GLTNHGHLSS  420
LQLPDQSSSE VYAEQERIVL TVFRDCLNRI ITLGKSKETK CSSLARSELT RFHGSDNGTA  480
KLRIDGQKQE EHSNNSVSEP VTPTPVVTAQ NNIPVITAAT IPAVSSIYLV SQYPPVTVHG  540
DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-291022331122Protein lin-54 homolog
5fd3_B6e-291022331122Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862324.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-140TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0K9QRU40.0A0A0K9QRU4_SPIOL; Uncharacterized protein
STRINGXP_010688245.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-133Tesmin/TSO1-like CXC domain-containing protein