PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013799-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 373aa    MW: 42361.1 Da    PI: 5.3488
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013799-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.3e-34491412103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k++e++ed++++ ++sws++ +sf+v+d+ +++ ++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F+kgkk+ll+
  AHYPO_013799-RA  49 FLNKTFEMVEDPKTDPIVSWSTTFDSFIVWDPYKLSIDLLPKYFKHSNFSSFVRQLNTYGFRKVHLDR---------WEFANSGFQKGKKHLLK 133
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      ++kr++++
  AHYPO_013799-RA 134 TVKRRNHT 141
                      *****875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3541133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-3144138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5345138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-2949138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MIMEPINKQS SDGSNADVVT IKEEEDEEEE VMVVPKPLQS LQENGPPPFL NKTFEMVEDP  60
KTDPIVSWST TFDSFIVWDP YKLSIDLLPK YFKHSNFSSF VRQLNTYGFR KVHLDRWEFA  120
NSGFQKGKKH LLKTVKRRNH TSNNINSIPL LQKEAELQNL KKEQEALKVE ILDLKQQQQD  180
SDTCLAAMDE RIKSAEWKQK QIILLVAKAM KNTASFQQLL QSYNQKTGLG IEHLCKKRRL  240
TANNSTNSML NTFPEKGIAP NSVPCHKENV RLSESEHMFL GSPNTDLCSQ LVPDRESNFT  300
SETSCSDLCS GNYIMWEKLM EDDVICEDNR KEDAALGVDP SKYVHELEDL IAKPTSLIGF  360
KNVGEIACPI GQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-214713827129Heat shock factor protein 1
5d5v_B4e-214713827129Heat shock factor protein 1
5d5v_D4e-214713827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137LKTVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715082.11e-143heat stress transcription factor A-7a-like
TrEMBLQ0PEL31e-131Q0PEL3_BETVU; Heat stress transcription factor HSF
STRINGXP_010696526.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-69heat shock transcription factor A2