PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009798-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 695aa    MW: 76605.3 Da    PI: 6.7073
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009798-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23120221199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g+ W++++iyr++++r++lt+GW+ Fv+a++L +gD++vF   ++
  AHYPO_009798-RA 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGEPWKFRHIYRGTPRRHLLTTGWSTFVNAKKLIAGDSIVFL--RT 209
                      89****************************997656666..69999********************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  AHYPO_009798-RA 210 ENGDLCVGIRRA 221
                      88999****997 PP
2Auxin_resp112.44.2e-37287369283
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ a+++++FevvY+Pra+t+eFvvk+ +v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dpv+Wp+S+Wr+L+
  AHYPO_009798-RA 287 ATHAAKGQPFEVVYYPRAGTPEFVVKAGHVKAALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPVHWPDSPWRLLQ 369
                      567899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.01E-28112223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-36114223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-20119220No hitNo description
PfamPF023621.4E-21120221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126120222IPR003340B3 DNA binding domain
SMARTSM010199.1E-21120222IPR003340B3 DNA binding domain
PfamPF065074.7E-32288369IPR010525Auxin response factor
PROSITE profilePS5174517.406608691IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MITFMDPKDK IKEVDNCLDS QLWHACAGGM VQMPLVNSRV YYFVQGHTEH ANGNVDFRNF  60
PRIPSYVLCR VEDIRYLADH ETDEVYAKIR LIPVGNEIDY NDEDIGVHSG EVQENKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGEPW KFRHIYRGTP  180
RRHLLTTGWS TFVNAKKLIA GDSIVFLRTE NGDLCVGIRR AKRGIGGGLD STSGWNPGSN  240
VLNYGAFSGF LREDENRITR NGNGIGLNSG NALAKVKIKV ESVIESATHA AKGQPFEVVY  300
YPRAGTPEFV VKAGHVKAAL QIRWCSGMRF KMPFETEDSS RISWFMGTIS SVQVADPVHW  360
PDSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPAIHL SPFSPPRKKF RLPHHPDFPI  420
DGQLPVPPFP GNFLGSSNPF GCLPDNFPAG MQGARHAQFG LSLSDFHMSK LQSGLFPAGF  480
PALDPTTTPS NRPSSSLSFQ KPASNDSVSC LLTMGNPNQS VKKSNATKPH HFVLFGKPIL  540
TERQMSLSRS GDAVSPVPTG NSSSEGNVDK AGNVSDGSGS ALNHDRSSVE QHPWLKDNRP  600
EIDMELETGH CKVFMESEDV GRTVELTLLN SYEELCCKLA SMFDIETSDM LNRVVYRDGS  660
GSSKQIGDEP FSEFARSAKR LTILMDSSSD NVGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-84839041388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684071.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9R0A20.0A0A0K9R0A2_SPIOL; Auxin response factor
STRINGXP_010684071.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]