PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009624-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CPP
Protein Properties Length: 751aa    MW: 83128.5 Da    PI: 7.2238
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009624-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.81.3e-15456494240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+CnCk+skClk+YCeCfaag +C e C+C++C+Nk 
  AHYPO_009624-RA 456 SCKRCNCKRSKCLKLYCECFAAGLYCVEPCNCQECFNKP 494
                      689**********************************96 PP
2TCR51.91.5e-16540578139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++k+gCnCkks ClkkYCeCf+ g+ Cs +C+Ce+CkN+
  AHYPO_009624-RA 540 RHKRGCNCKKSGCLKKYCECFQGGVGCSLNCRCEGCKNT 578
                      589***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.3E-16455496IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.612456580IPR005172CRC domain
PfamPF036383.6E-11458493IPR005172CRC domain
SMARTSM011143.8E-16540581IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-12542578IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MDTPDKTAEP SPSSFLSKFE DSPVFNYIST LSPIKTFSLG QSSQSFHLLS FSSPQVLQTP  60
PTYPKDPKIP RASHATNALK NDNFQKVCGA ETVESSAQIE PSDLHTAEVG TINREVNVRS  120
TDSSSKLISE IPRALKYECD SAKPHHGFNV AGRELFPAKI VHDNPKQVDN TIENEMDVQE  180
SHMEQIMEQN MEKCKWDKLG REASEVLNCN SDTKESSNDQ LDAFVATVLQ TPGEHINGPQ  240
KIESTCPDLE HHPMEASTNK VGDIGNSNKR GKVPIDITCD VLAEEVVHCL KTEMDNKQQT  300
ARRRCLVYDM SGSHYRKLLA DSPTKQGVSS DTSADECVMA SRTKGNKFAS ALPGIGLHLN  360
ALAAVSKNKI IVKSQTLTCR RKLKSSPCTK SSLSDTRPTV KLESEVFERE SDEQNDGVQV  420
SRNVSETSIF GDGVEQPQNS PKKKRRKLGD IGEADSCKRC NCKRSKCLKL YCECFAAGLY  480
CVEPCNCQEC FNKPIHEDTV LEARRQIESR NPLAFAPKVI RCAATPNTVD EIKNTPASAR  540
HKRGCNCKKS GCLKKYCECF QGGVGCSLNC RCEGCKNTFG CYEGSKFLQR NASDVNSCDV  600
LITEDKNDNQ ATLESLKNAR QPVRRPFQFD GMTPGCHMHP TERILESCAL HKSDETAFED  660
ESFNDNNKIA TDDALDSNAL KGDYLFPSTC VKSASPNCKR ISSPHCNFET SPSWRSCRKL  720
ILRSIPSMPT FTPEKESIEC RQSFNGKNLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1745857712120Protein lin-54 homolog
5fd3_B3e-1745857712120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440447PKKKRRKL
2441445KKKRR
3441446KKKRRK
4442446KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021773185.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 3
TrEMBLA0A0K9QV850.0A0A0K9QV85_SPIOL; Uncharacterized protein
STRINGXP_010675092.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-81TESMIN/TSO1-like CXC 2