PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009343-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

HSF

Protein Properties

Length: 477aa MW: 53031.9 Da PI: 5.3767

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009343-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.1	1.6e-34	18	108	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+y++++d++++e++sws + nsf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F ++kk+ll+ AHYPO_009343-RA 18 FLLKTYDMVDDSSTDEIVSWSPTYNSFIVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRDKKHLLK 102 9******************999*************************************999.........************* PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k AHYPO_009343-RA 103 NIHRRK 108 **98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.3E-60	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.35E-35	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.1E-37	14	107	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.8E-30	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-19	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-19	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	57	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-19	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MEVIQSTTGG GGGGPAPFLL KTYDMVDDSS TDEIVSWSPT YNSFIVWNPP EFARVLLPTY 60 FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFIRDKKHL LKNIHRRKPI HSHSNPPPDP 120 ERAAYEEEIE KLNREKNDLD AKVSSFKSHH CAAKSQLEDI TQRICSMEQR QEKLLTYAMK 180 EFKNPTFVEV LAQKIEAMDL TAYNKKRRLP HSDRLLPAVD NNFGDIYQQD LSNKLKLELS 240 TAVSNMNLVS NSTHSSNEDW SSPTRRSSAI DPKDAELGVS TLPFSTETIE LSDAETCLAF 300 KMDTLLSDKV RVKEYPGLSS LQQNLVSAEE NEGQICCQLN LSLASSPLPL NQNAYSARPT 360 PMDVDVSGSQ GMKSDANGNN RDGVGVASKN NHSISNVSNS SSQEIGSKSG DPTPTAPAPA 420 RVNDLFWEQF LTERPGASDT EEASSSYRAL PSDEQEDRGS SHGMSRTAKN LGKLTL*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MEVIQSTTGG GGGGPAPFLL KTYDMVDDSS TDEIVSWSPT YNSFIVWNPP EFARVLLPTY  60
FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFIRDKKHL LKNIHRRKPI HSHSNPPPDP  120
ERAAYEEEIE KLNREKNDLD AKVSSFKSHH CAAKSQLEDI TQRICSMEQR QEKLLTYAMK  180
EFKNPTFVEV LAQKIEAMDL TAYNKKRRLP HSDRLLPAVD NNFGDIYQQD LSNKLKLELS  240
TAVSNMNLVS NSTHSSNEDW SSPTRRSSAI DPKDAELGVS TLPFSTETIE LSDAETCLAF  300
KMDTLLSDKV RVKEYPGLSS LQQNLVSAEE NEGQICCQLN LSLASSPLPL NQNAYSARPT  360
PMDVDVSGSQ GMKSDANGNN RDGVGVASKN NHSISNVSNS SSQEIGSKSG DPTPTAPAPA  420
RVNDLFWEQF LTERPGASDT EEASSSYRAL PSDEQEDRGS SHGMSRTAKN LGKLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	8	107	16	129	Heat shock factor protein 1
5d5v_B	2e-23	8	107	16	129	Heat shock factor protein 1
5d5v_D	2e-23	8	107	16	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673379.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-148	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A0J8CRZ7	0.0	A0A0J8CRZ7_BETVU; Uncharacterized protein
STRING	XP_010673379.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-141	HSF family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009343-RA

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]