PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003244-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CPP
Protein Properties Length: 742aa    MW: 82005 Da    PI: 6.219
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003244-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.68e-16462500240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+CnCk+skClk+YCeCfaag +C e C+C+dC+Nk 
  AHYPO_003244-RA 462 SCKRCNCKRSKCLKLYCECFAAGLYCVEPCNCQDCFNKP 500
                      689**********************************96 PP
2TCR52.68.8e-17546585140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+gCnCkks ClkkYCeCf+ g+ Cs +C+Ce+CkN+ 
  AHYPO_003244-RA 546 RHKRGCNCKKSGCLKKYCECFQGGVGCSLSCRCEGCKNTF 585
                      589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-17461502IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.335462586IPR005172CRC domain
PfamPF036382.5E-11464499IPR005172CRC domain
SMARTSM011142.8E-18546587IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-12548584IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MDTPDKIAQL TPSSSSFLSK YEDSPVFNYI STLSPIKSFS LGNSTQSFPL LGFSSPRALE  60
TPPPYPREPK IPRASHAIEA PKNDSFQKVC EAKAAEMSVE IEPADLQTTG MDQIEQEANV  120
SPTDSTSKTI SEIPRALKYK CDPPENNDAH RDAVKPRYAL SVAGKELFPV KIMEGNPKDA  180
DGSFENEMRV QASQMEQNKE ACEGREFVCE TSDMSHSHSN TKESYHDQMD AFVAAVLQPP  240
NDHINDTQKL DSACPVVDNH VIEEVPVGST RAQLAKEAIQ WLKTEMDDKP CSQKEQTTRR  300
RCLVYEVSGS RYRKLVADSP SNSPTKQGVS SVIPDDKCVI SGRSGGYKFS SALPSIGLHL  360
NALAAVSKDK IIVKSQTLTC RRQLIRSPRT ISSSDSVISD ARLPTVKLEP EIVERESDEQ  420
NDEVPVSENV PENSFFGNGV ELPQCSPKKK RRKSENIGEP ESCKRCNCKR SKCLKLYCEC  480
FAAGLYCVEP CNCQDCFNKP IHEDTVLETR RQIESRNPLA FAPKVILCAS TPNTVDEVNK  540
TPASARHKRG CNCKKSGCLK KYCECFQGGV GCSLSCRCEG CKNTFGRKEG TESIVFQETK  600
FLHRNASDVS LHDDVPRVED ENDDQATTQP SKNARTPHPI HTHTDGPFLQ SSTPLITDQS  660
NETAFEAEDN DALESEALKG DYSLPTTSVK SASPNCKRIS PPHSGFDTSP GWRSCRKLIL  720
RSIPSLTFTP EKENMELPGK LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1646658314120Protein lin-54 homolog
5fd3_B2e-1646658314120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447451KKKRR
2447452KKKRRK
3448452KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021773185.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 3
TrEMBLA0A0K9QWU50.0A0A0K9QWU5_SPIOL; Uncharacterized protein
STRINGXP_010675092.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.16e-87Tesmin/TSO1-like CXC domain-containing protein