PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002183-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 372aa    MW: 42777.4 Da    PI: 5.9311
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002183-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.3e-36601512102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k++e++ed++++++isws + +sf+++d+++f+ ++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF++++F++gkk+ll+
  AHYPO_002183-RA  60 FLNKTFEMVEDPKTNSIISWSGTCDSFIIWDPHKFSIELLPKYFKHSNFSSFVRQLNTYGFRKVHLDR---------WEFANSKFQRGKKHLLK 144
                      9********************999*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+++
  AHYPO_002183-RA 145 TIKRRNH 151
                      *****87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.26E-3456149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5456149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-3856149IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.5E-3260149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-186083IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-1898110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-18111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDLKNNLSLG LQLDGEISCS NEKEIKLNVI SIKEEEQEEE ESMEVPKPLQ SLQEVGPTPF  60
LNKTFEMVED PKTNSIISWS GTCDSFIIWD PHKFSIELLP KYFKHSNFSS FVRQLNTYGF  120
RKVHLDRWEF ANSKFQRGKK HLLKTIKRRN HASNNNSRLL FQKEAEIQNL RKEQEALQLE  180
ILDLKQEQQE SNTCLASMVD RIKSAEWKQR EFIMLIAKAM KTTPSFQQLI QSYRNKKGFG  240
NGQGQVSKKR RLTANDSIMN TFMEKGITHH SVFEPENSFL ESRDTDVCPS LMPDQKSNLT  300
SETSSPDLSS GNYIMWEKLM EDEVICEENN KENAFGVDQS KYVHELEDLI AKPNSFIGFK  360
NVGEIACPSG Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-226014929129Heat shock factor protein 1
5d5v_B2e-226014929129Heat shock factor protein 1
5d5v_D2e-226014929129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148LKTIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715082.11e-152heat stress transcription factor A-7a-like
TrEMBLQ0PEL31e-132Q0PEL3_BETVU; Heat stress transcription factor HSF
STRINGXP_010696526.11e-133(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-63heat shock transcription factor A2