PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001674-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 664aa    MW: 73815.8 Da    PI: 6.0013
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001674-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.59e-22123223198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d+++++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + 
  AHYPO_001674-RA 123 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHSNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RG 212
                      99****************************964333..4459************************************************..44 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++el+v+v+r
  AHYPO_001674-RA 213 ENGELRVGVRR 223
                      9999*****97 PP
2Auxin_resp113.42.1e-37249331183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aaha++tk+ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv d++p++W+nS+WrsLk
  AHYPO_001674-RA 249 AAHATQTKTLFSVFYKPRTSRSEFLVSVNKYLEAKTHKLSVGMRFKMRFEGDEVPERRFSGTIVGVDDTSPSSWTNSEWRSLK 331
                      79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-43114252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-39116238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-19121223No hitNo description
PROSITE profilePS5086310.757123225IPR003340B3 DNA binding domain
SMARTSM010193.9E-21123225IPR003340B3 DNA binding domain
PfamPF023621.8E-19123223IPR003340B3 DNA binding domain
PfamPF065073.9E-34249331IPR010525Auxin response factor
PfamPF023097.8E-7523571IPR033389AUX/IAA domain
SuperFamilySSF542771.44E-10534616No hitNo description
PROSITE profilePS5174526.529535632IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MALQDTHGSG GRPEQDALYK ELWYACAGPL VNVPREGERV YYFPQGHMEQ LEASTQQGLE  60
QQMPSFNLPS KILCKVAHIE LRAEAETDEV YAQITLVPEL DQSEVTKPDP PLPDPPKYNV  120
HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVATDLHS NEWHFRHIFR  180
GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRLMRQLNN MPSSVISSHS  240
MHLGVLATAA HATQTKTLFS VFYKPRTSRS EFLVSVNKYL EAKTHKLSVG MRFKMRFEGD  300
EVPERRFSGT IVGVDDTSPS SWTNSEWRSL KVQWDEPSSI VRPDRVSPWE LEPLVATNST  360
NSQPTTQRNK RPRSAVTPSP ATDVSALGIW KSPGDSLSVA CGEVERPRDQ LSSVTKAGSA  420
VFTANSSVPA ISSPSLYWPN RVDTVSESLG SVINKDFGEK RKQNGAGCRL FGIQLFDHSN  480
LDENSARVGD DQPVPSLEAE SDRSNVNRSD LPSLSCDPDK SSQKSLLDSQ SKQNRTCTKV  540
HMQGVAVGRA VDLTRFDCYE DLLKKLEQLF DIKGELCGSS GKWKVVYTDD EDDMMMVGDD  600
PWQSLFSEFC SMVRKIYIYT SEEVKRLSPK SKISVEEDVK AGYADVDLPT ASEEQSSAVG  660
PSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.073546355Auxin response factor 1
4ldw_A0.073546355Auxin response factor 1
4ldw_B0.073546355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682136.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A0K9R8S60.0A0A0K9R8S6_SPIOL; Auxin response factor
STRINGXP_010682136.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]