PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000564-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 691aa    MW: 76302.2 Da    PI: 6.6731
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000564-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.7e-23119220199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g+ W++++iyr++++r++lt+GW+ Fv+a++L +gD++vF   ++
  AHYPO_000564-RA 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGEPWKFRHIYRGTPRRHLLTTGWSTFVNAKKLIAGDSIVFL--RT 208
                      89****************************997656666..69999********************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  AHYPO_000564-RA 209 ENGDLCVGIRRA 220
                      88999****997 PP
2Auxin_resp108.95.4e-36282365183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa +a+++++FevvY+Pra+t+eFvvk+  v++al+v+++ GmRfkm fetedss++++ +Gt ++v+ +dpv+Wp+S+Wr+L+
  AHYPO_000564-RA 282 AAARAAKGQPFEVVYYPRAGTPEFVVKAGLVRAALQVRWCSGMRFKMPFETEDSSRISWfMGTTSSVQVADPVHWPDSPWRLLQ 365
                      678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-28111222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-36113222IPR015300DNA-binding pseudobarrel domain
CDDcd100176.79E-21118219No hitNo description
PfamPF023621.4E-21119220IPR003340B3 DNA binding domain
SMARTSM010199.1E-21119221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126119221IPR003340B3 DNA binding domain
PfamPF065071.5E-30282365IPR010525Auxin response factor
PROSITE profilePS5174517.061604687IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MITFMDTKDK IKETDNCLDS QLWHACAGGM VQMPTIDTKV YYFVQGHIEH ANGNVDFRNF  60
PRIPPYVLCR VEGIRYLADQ ETDEVYAKIR LIPVANDLDY SDEDSSVNGE VQENKPASFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQNIL AKDVHGEPWK FRHIYRGTPR  180
RHLLTTGWST FVNAKKLIAG DSIVFLRTEN GDLCVGIRRA KRGIGGGLDT TSGWNPGSNV  240
LNYGAFSAFL REDESRVMRN GNGVGGNVSV KGKVKMESVI EAAARAAKGQ PFEVVYYPRA  300
GTPEFVVKAG LVRAALQVRW CSGMRFKMPF ETEDSSRISW FMGTTSSVQV ADPVHWPDSP  360
WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPAIHLSRYS PPRKKFRLPH HPEFLMDGQL  420
LVPTFPGNFL GPSNPFGCLP DNSPAGMQGA RHAQFGLPLS DLHMSKLQSG YFSGGFSALD  480
PTTTLPNRPS SSLNFQKPST NDNISCLLTM GNLTQSIKKS DASKPHQFVL FGKPILTEQQ  540
MSLSRSGDTV SPAPTGNSSS EGNVDKAGNV SDGSGSALNQ DHCSTERLPS LKENRLELDM  600
ELETGHCKVF MESEDVGRTL ELTLLNSYEE LCSRLANMFD IECSDILNRV VYRDGKGSSK  660
QIGDEPFGEF AKRAKRLTIL MDSSSDNIGV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-80838641388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684071.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9R0A20.0A0A0K9R0A2_SPIOL; Auxin response factor
STRINGXP_010684071.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]